View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7332_low_65 (Length: 235)
Name: NF7332_low_65
Description: NF7332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7332_low_65 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 48268153 - 48267949
Alignment:
| Q |
18 |
atcaaccattttctgcaccaaatcattaaaactcacatttttcttaacactaattatccttgtttgtccaccaacatatctcaacacgccatcactaggc |
117 |
Q |
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| T |
48268153 |
atcaaccattttctgcaccaaatcattaaaactcacatttttcttaacactaattatccttgtttgtccaccaacatatctcaacacgccatcactaggc |
48268054 |
T |
|
| Q |
118 |
ctgggcaaaatcttcccaccaaaactacacaaaaacttaactttcctacccgaatttgaatcatcgctggtctcgtcaacagacctagttccaccattac |
217 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48268053 |
ctaggcaaaatcttcccaccaaaactacacaaaaacttaactttcctacccgaatttgaatcatcgctggtctcgtcaacagacctagttccaccattac |
48267954 |
T |
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| Q |
218 |
cacca |
222 |
Q |
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||||| |
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| T |
48267953 |
cacca |
48267949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 155
Target Start/End: Complemental strand, 25239923 - 25239786
Alignment:
| Q |
18 |
atcaaccattttctgcaccaaatcattaaaactcacatttttcttaacactaattatccttgtttgtccaccaacatatctcaacacgccatcactaggc |
117 |
Q |
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||||||||| || ||||||||||||||||||||||||||| |||||||||| |||||||| || || ||||||||||| ||||||| ||||||||||| |
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| T |
25239923 |
atcaaccatcttttgcaccaaatcattaaaactcacatttctcttaacacttattatcctagtctgcccaccaacatacctcaacaatccatcactaggt |
25239824 |
T |
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| Q |
118 |
ctgggcaaaatcttcccaccaaaactacacaaaaactt |
155 |
Q |
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|| || ||||| |||||||| ||||||||| |||||| |
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| T |
25239823 |
ctaggataaatcctcccaccataactacacataaactt |
25239786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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