View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7332_low_69 (Length: 215)
Name: NF7332_low_69
Description: NF7332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7332_low_69 |
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Alignment Details
Target: chr8 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 19 - 182
Target Start/End: Complemental strand, 21538248 - 21538084
Alignment:
| Q |
19 |
aactgaatctacgggaaatacgaattacattataccatggcgtgtattccaccaaatgctacnnnnnnnnnnnnnnnnnnnnatattaaaataatgtttg |
118 |
Q |
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||||||||| |||| |||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||| |||| |
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| T |
21538248 |
aactgaatccacggaaaatacgaattacaatatacgctggcgtgtattccaccaaatgctactttttttgttttttatttttatattaaaataatatttg |
21538149 |
T |
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| Q |
119 |
tgaaaatca-tttagtacaattcgtggttttggtttattttcattcgtggttaatagcattgctg |
182 |
Q |
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| T |
21538148 |
tgaaaatcactttagtacaattcgtggttttcgtttattttcattcgtggttaatagcattgctg |
21538084 |
T |
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Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 173
Target Start/End: Complemental strand, 13332813 - 13332658
Alignment:
| Q |
19 |
aactgaatctacgggaaatacgaattacattataccatggcgtgtattccaccaaatgctacnnnnnnnnnnnnnnnnnnnnatattaaaataatgtttg |
118 |
Q |
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| T |
13332813 |
aactgaatccacggaaaatacgaattacactatacgatggcttgtattccaccaaatgctactttttttgttttttatttttatattaaaataatgtttg |
13332714 |
T |
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| Q |
119 |
tgaaaatca-tttagtacaattcgtggttttggtttattttcattcgtggttaata |
173 |
Q |
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| T |
13332713 |
tgaaaatcactttagtacaatttgtggttttcgtttattttaattcgtggttaata |
13332658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 5e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 101 - 179
Target Start/End: Original strand, 2306748 - 2306827
Alignment:
| Q |
101 |
atattaaaataatgtttgtgaaaatca-tttagtacaattcgtggttttggtttattttcattcgtggttaatagcattg |
179 |
Q |
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| T |
2306748 |
atattaaaataatgtttgtgaaaatcactttagtagaattcgtgattttcgtttactttcattcgtggataatagcattg |
2306827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 2306666 - 2306724
Alignment:
| Q |
19 |
aactgaatctacgggaaatacgaattacattataccatggcgtgtattccaccaaatgc |
77 |
Q |
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||||||||| |||| |||||||||||||| ||||| || |||||||||||||||||||| |
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| T |
2306666 |
aactgaatccacggaaaatacgaattacactatacgatagcgtgtattccaccaaatgc |
2306724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 3e-19; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 35840734 - 35840678
Alignment:
| Q |
128 |
tttagtacaattcgtggttttggtttattttcattcgtggttaatagcattgctgat |
184 |
Q |
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| T |
35840734 |
tttagtacaattcatggttttcgtttattttcattcgtggttaatagcattgctgat |
35840678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 184
Target Start/End: Complemental strand, 41570487 - 41570406
Alignment:
| Q |
104 |
ttaaaataatgtttgtgaaaatca-tttagtacaattcgtggttttggtttattttcattcgtggttaatagcattgctgat |
184 |
Q |
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|||||||||||||||||||||||| ||||| ||| || || ||||| |||| ||| ||||||||| ||||||||||||||| |
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| T |
41570487 |
ttaaaataatgtttgtgaaaatcactttagcacagtttgtcgttttcgtttgtttctattcgtggtgaatagcattgctgat |
41570406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 35840853 - 35840792
Alignment:
| Q |
19 |
aactgaatctacgggaaatacgaattacattataccatggcgtgtattccaccaaatgctac |
80 |
Q |
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||||||||| |||| |||||||||||| | ||||| ||||| ||||||||||| |||||||| |
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| T |
35840853 |
aactgaatccacggaaaatacgaattatactatacgatggcatgtattccaccgaatgctac |
35840792 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 4087960 - 4088006
Alignment:
| Q |
31 |
gggaaatacgaattacattataccatggcgtgtattccaccaaatgc |
77 |
Q |
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| T |
4087960 |
gggaaatacgaattacacaatacgatggcgtgtattccaccaaatgc |
4088006 |
T |
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