View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7332_low_8 (Length: 596)

Name: NF7332_low_8
Description: NF7332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7332_low_8
NF7332_low_8
[»] chr4 (1 HSPs)
chr4 (21-584)||(28730882-28731445)
[»] chr8 (3 HSPs)
chr8 (21-584)||(38121308-38121871)
chr8 (21-584)||(38608252-38608815)
chr8 (21-584)||(38793035-38793598)
[»] chr1 (2 HSPs)
chr1 (21-216)||(31529204-31529399)
chr1 (21-216)||(51801272-51801467)
[»] chr7 (1 HSPs)
chr7 (25-215)||(34875825-34876015)
[»] scaffold0082 (1 HSPs)
scaffold0082 (241-386)||(34038-34183)


Alignment Details
Target: chr4 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 21 - 584
Target Start/End: Complemental strand, 28731445 - 28730882
Alignment:
Q  21 tttcgctccctctgatgcatcgatccgcacttgtttttcttgctctgtttcgaatctcctccgtgaacacatcgttccaggtatattcaccatcgaatat 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28731445 tttcgctccctctgatgcatcgatccgcacttgtttttcttgctctgttccgaatctcctccgtgaacacatcgttccaggtatattcaccatcgaatat 28731346  T
Q  121 ctccggcgtcttgcttttggcaccaagatcgagactctcagtcctggacgttgcataaccgtcacttccgagtcgattcatccgaacagcacttccagcg 220  Q
    |||||||||||||||||||||||||||||||||||||||||||| || |||||| |||| |||||||||||||||||||||||||||||||||||| |||    
T  28731345 ctccggcgtcttgcttttggcaccaagatcgagactctcagtcccggccgttgcgtaactgtcacttccgagtcgattcatccgaacagcacttccggcg 28731246  T
Q  221 gtgctccgaaagtcttcatcggaggcgttgagattactcaaccagatctattcaacaacggaatggttgttgttcacggccttcaaggtttcgcctctac 320  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28731245 gtgctccaaaagtattcatcggaggcgttgagattactcaaccagatctattcaacaacggaatggttgttgttcacggccttcaaggtttcgcctctac 28731146  T
Q  321 gctttctccgttttcttgcgacgttgagagaatgacttcactctcctttccgtttcatcctgatcaccgttccagtgctcatgttcacagtcccggcgcc 420  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  28731145 gctttctccgttttcttgcgacgttgagagaatgacttcactctcctttccgtttcatcctgatcaccgttccagtgctcatgttcacactcccggcgcc 28731046  T
Q  421 accgtgcttcctgctattatgcgcctcatgctacgagacacagcgctcaggctccgtaataacggtttcagcatcctctccctcgcaatgaaggtaaaat 520  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  28731045 accgtgcttcctgctattatgcgcctcatgctacgagacacaacgctcaggctccgtaataacggtttcagcatcctctcccttgcaatgaaggtaaaat 28730946  T
Q  521 acgcagagctcataactctcaacaacatgactattttcgccgttgatgatctttctatattctc 584  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28730945 acgaagagctcataactctcaacaacatgactattttcgccgttgatgatctttctatattctc 28730882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 432; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 21 - 584
Target Start/End: Complemental strand, 38121871 - 38121308
Alignment:
Q  21 tttcgctccctctgatgcatcgatccgcacttgtttttcttgctctgtttcgaatctcctccgtgaacacatcgttccaggtatattcaccatcgaatat 120  Q
    |||||||||||||||||||||| | |||||||| ||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  38121871 tttcgctccctctgatgcatcgcttcgcacttgcttttcttgctctgttccgaatctccttcgtgaacacatagttccaggtatattcaccatcgaatat 38121772  T
Q  121 ctccggcgtcttgcttttggcaccaagatcgagactctcagtcctggacgttgcataaccgtcacttccgagtcgattcatccgaacagcacttccagcg 220  Q
    || ||||| |||||||||||||||||||| |||||||||||||| || |||||| ||||||||||||||||||||||||||| ||||| ||||||| ||     
T  38121771 cttcggcgacttgcttttggcaccaagattgagactctcagtcccggccgttgcgtaaccgtcacttccgagtcgattcatcagaacaacacttccggca 38121672  T
Q  221 gtgctccgaaagtcttcatcggaggcgttgagattactcaaccagatctattcaacaacggaatggttgttgttcacggccttcaaggtttcgcctctac 320  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  38121671 gtgctccaaaagtcttcatcggaggcgttgagattactcaaccggatctattcaacaacggaatggttgttgttcacggccttcaaggtttcgcctctaa 38121572  T
Q  321 gctttctccgttttcttgcgacgttgagagaatgacttcactctcctttccgtttcatcctgatcaccgttccagtgctcatgttcacagtcccggcgcc 420  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  38121571 gctttctccgttttcttgcgacgttgagagaatgagttctctctcctttccgtttcatcctgatcaccgttccggtgctcatgttcacactcccggcgcc 38121472  T
Q  421 accgtgcttcctgctattatgcgcctcatgctacgagacacagcgctcaggctccgtaataacggtttcagcatcctctccctcgcaatgaaggtaaaat 520  Q
    |||||||| |||||||||||||||||||||||||||||  ||  | | ||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  38121471 accgtgctccctgctattatgcgcctcatgctacgagatgcaatggtaaggctccgtaataacggtttcagcatcctctcccttgctatgaaggtaaaat 38121372  T
Q  521 acgcagagctcataactctcaacaacatgactattttcgccgttgatgatctttctatattctc 584  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  38121371 acgcagagctcataactctcaacaacatgactattttcgctgttgatgatctttctatattctc 38121308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 21 - 584
Target Start/End: Original strand, 38608252 - 38608815
Alignment:
Q  21 tttcgctccctctgatgcatcgatccgcacttgtttttcttgctctgtttcgaatctcctccgtgaacacatcgttccaggtatattcaccatcgaatat 120  Q
    |||||||||||| ||||| ||| | |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||| |||    
T  38608252 tttcgctccctccgatgcttcgcttcgcacttgcttttcttgctctgttccgaatctcctccgtgaacacatcgttccaggtttattcactatcgagtat 38608351  T
Q  121 ctccggcgtcttgcttttggcaccaagatcgagactctcagtcctggacgttgcataaccgtcacttccgagtcgattcatccgaacagcacttccagcg 220  Q
     | ||    ||| |||||||||||||||||||||| |||||||| || ||||||||||||||||||||||| ||||||||| ||||||  ||| || |||    
T  38608352 ttgcgtacgcttccttttggcaccaagatcgagacgctcagtccaggccgttgcataaccgtcacttccgattcgattcattcgaacattactaccggcg 38608451  T
Q  221 gtgctccgaaagtcttcatcggaggcgttgagattactcaaccagatctattcaacaacggaatggttgttgttcacggccttcaaggtttcgcctctac 320  Q
    ||||||| ||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  38608452 gtgctccaaaagttttcatcggaggcgttgagattgctcaaccggatctattcaacaacggaatggttgttgttcacggccttcaaggtttcgtctctac 38608551  T
Q  321 gctttctccgttttcttgcgacgttgagagaatgacttcactctcctttccgtttcatcctgatcaccgttccagtgctcatgttcacagtcccggcgcc 420  Q
     ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||| |    
T  38608552 actttctccgttttcttgtgacgttgagagaatgacttcactctcctttccgtttcatcctgatcaccgttccagtgctcacgttcacactcacggcgtc 38608651  T
Q  421 accgtgcttcctgctattatgcgcctcatgctacgagacacagcgctcaggctccgtaataacggtttcagcatcctctccctcgcaatgaaggtaaaat 520  Q
    |||||||| |||||||| ||||||||||||||||||||  ||  ||||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  38608652 accgtgctccctgctataatgcgcctcatgctacgagatgcaatgctcaggctccgtaataacggtttcagcatcctctcccttgcgatgaaggtaaaat 38608751  T
Q  521 acgcagagctcataactctcaacaacatgactattttcgccgttgatgatctttctatattctc 584  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38608752 acgcagagctcataactctcaacaacatgactattttcgccgttgatgatctttctatattctc 38608815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 21 - 584
Target Start/End: Original strand, 38793035 - 38793598
Alignment:
Q  21 tttcgctccctctgatgcatcgatccgcacttgtttttcttgctctgtttcgaatctcctccgtgaacacatcgttccaggtatattcaccatcgaatat 120  Q
    |||||||||||| ||||| ||| | |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||| |||    
T  38793035 tttcgctccctccgatgcttcgcttcgcacttgcttttcttgctctgttccgaatctcctccgtgaacacatcgttccaggtttattcactatcgagtat 38793134  T
Q  121 ctccggcgtcttgcttttggcaccaagatcgagactctcagtcctggacgttgcataaccgtcacttccgagtcgattcatccgaacagcacttccagcg 220  Q
     | ||    ||| |||||||||||||||||||||| |||||||| || ||||||||||||||||||||||| ||||||||| ||||||  ||| || |||    
T  38793135 ttgcgtacgcttccttttggcaccaagatcgagacgctcagtccaggccgttgcataaccgtcacttccgattcgattcattcgaacattactaccggcg 38793234  T
Q  221 gtgctccgaaagtcttcatcggaggcgttgagattactcaaccagatctattcaacaacggaatggttgttgttcacggccttcaaggtttcgcctctac 320  Q
    ||||||| ||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  38793235 gtgctccaaaagttttcatcggaggcgttgagattgctcaaccggatctattcaacaacggaatggttgttgttcacggccttcaaggtttcgtctctac 38793334  T
Q  321 gctttctccgttttcttgcgacgttgagagaatgacttcactctcctttccgtttcatcctgatcaccgttccagtgctcatgttcacagtcccggcgcc 420  Q
     ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||| |    
T  38793335 actttctccgttttcttgtgacgttgagagaatgacttcactctcctttccgtttcatcctgatcaccgttccagtgctcacgttcacactcacggcgtc 38793434  T
Q  421 accgtgcttcctgctattatgcgcctcatgctacgagacacagcgctcaggctccgtaataacggtttcagcatcctctccctcgcaatgaaggtaaaat 520  Q
    |||||||| |||||||| ||||||||||||||||||||  ||  ||||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  38793435 accgtgctccctgctataatgcgcctcatgctacgagatgcaatgctcaggctccgtaataacggtttcagcatcctctcccttgcgatgaaggtaaaat 38793534  T
Q  521 acgcagagctcataactctcaacaacatgactattttcgccgttgatgatctttctatattctc 584  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38793535 acgcagagctcataactctcaacaacatgactattttcgccgttgatgatctttctatattctc 38793598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 152; Significance: 3e-80; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 21 - 216
Target Start/End: Complemental strand, 31529399 - 31529204
Alignment:
Q  21 tttcgctccctctgatgcatcgatccgcacttgtttttcttgctctgtttcgaatctcctccgtgaacacatcgttccaggtatattcaccatcgaatat 120  Q
    |||||||||||||||||| ||| | |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31529399 tttcgctccctctgatgcttcgcttcgcacttgcttttcttgctctgttccgaatctcctccgtgaacacatcgttccaggtatattcaccatcgaatat 31529300  T
Q  121 ctccggcgtcttgcttttggcaccaagatcgagactctcagtcctggacgttgcataaccgtcacttccgagtcgattcatccgaacagcacttcc 216  Q
    |||||||| |||||||||||||||||||| |||||||||||||| || |||||| ||||||||||||||||||||||||||||||||| |||||||    
T  31529299 ctccggcgacttgcttttggcaccaagattgagactctcagtcccggccgttgcgtaaccgtcacttccgagtcgattcatccgaacaacacttcc 31529204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 21 - 216
Target Start/End: Complemental strand, 51801467 - 51801272
Alignment:
Q  21 tttcgctccctctgatgcatcgatccgcacttgtttttcttgctctgtttcgaatctcctccgtgaacacatcgttccaggtatattcaccatcgaatat 120  Q
    |||||||||||||||| | ||| | | |||||| |||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||| ||||     
T  51801467 tttcgctccctctgatacttcgcttcacacttgcttttcttgctgtgttccgaatctcctccgtgaacacatcgttccagatatattcaccatcaaatac 51801368  T
Q  121 ctccggcgtcttgcttttggcaccaagatcgagactctcagtcctggacgttgcataaccgtcacttccgagtcgattcatccgaacagcacttcc 216  Q
    |||||||| ||||||||||||||||||||||||||||||||||| || |||||| ||| |||||||||||| |||||||||||||||| |||||||    
T  51801367 ctccggcgacttgcttttggcaccaagatcgagactctcagtcccggccgttgcgtaatcgtcacttccgattcgattcatccgaacaacacttcc 51801272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 139; Significance: 2e-72; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 25 - 215
Target Start/End: Original strand, 34875825 - 34876015
Alignment:
Q  25 gctccctctgatgcatcgatccgcacttgtttttcttgctctgtttcgaatctcctccgtgaacacatcgttccaggtatattcaccatcgaatatctcc 124  Q
    ||||||| |||||| ||| | | |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34875825 gctccctttgatgcttcgcttcacacttgcttttcttgctctgttccgaatctcctccgtgaacacatcgttccaggtatattcaccatcgaatatctcc 34875924  T
Q  125 ggcgtcttgcttttggcaccaagatcgagactctcagtcctggacgttgcataaccgtcacttccgagtcgattcatccgaacagcacttc 215  Q
    |||| ||||||||||||||||||||||||||||||||||| || |||||| ||||| ||||||||||||||||||||||||||| ||||||    
T  34875925 ggcgacttgcttttggcaccaagatcgagactctcagtcccggccgttgcgtaaccatcacttccgagtcgattcatccgaacaacacttc 34876015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0082 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0082
Description:

Target: scaffold0082; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 241 - 386
Target Start/End: Complemental strand, 34183 - 34038
Alignment:
Q  241 ggaggcgttgagattactcaaccagatctattcaacaacggaatggttgttgttcacggccttcaaggtttcgcctctacgctttctccgttttcttgcg 340  Q
    ||||| || ||||| || ||||| ||||| ||||||||||| ||||| ||| |||| |||||||||||||||  |||| |||| |||||||||| |||||    
T  34183 ggaggggtggagatcacgcaacctgatctcttcaacaacggcatggtggttattcatggccttcaaggtttcatctctccgctctctccgttttattgcg 34084  T
Q  341 acgttgagagaatgacttcactctcctttccgtttcatcctgatca 386  Q
    |||| ||||| ||||| || ||||| || ||||| ||||| |||||    
T  34083 acgtggagaggatgacctcgctctcgttcccgttccatccagatca 34038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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