View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7333_high_10 (Length: 310)
Name: NF7333_high_10
Description: NF7333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7333_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 104; Significance: 7e-52; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 20 - 127
Target Start/End: Original strand, 23827187 - 23827294
Alignment:
| Q |
20 |
caccacagtatattcacccatattagttccctacatataaacaacctttttcagctctcctccttgctttttctcttgtctatatccttccttgaacttc |
119 |
Q |
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| T |
23827187 |
caccacagtatattcacccatattagttccctacatataaaccacctttttcagctctcctccttgctttttctcttgtctatatccttccttgaacttc |
23827286 |
T |
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| Q |
120 |
attactaa |
127 |
Q |
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|||||||| |
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| T |
23827287 |
attactaa |
23827294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 202 - 299
Target Start/End: Original strand, 23827370 - 23827467
Alignment:
| Q |
202 |
gagtttcaattcacaatcatgagtcatttcttttggagttgaccttctctgctttgttgttgtgatctacaggcaacaaagttatgggaattagtatt |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23827370 |
gagtttcaattcacaatcatgagtcatttcttttggagttgaccttctctgctttgttgttgtgatctacaggcaacaaagttatgggaattagtatt |
23827467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 216 - 299
Target Start/End: Original strand, 23823522 - 23823605
Alignment:
| Q |
216 |
aatcatgagtcatttcttttggagttgaccttctctgctttgttgttgtgatctacaggcaacaaagttatgggaattagtatt |
299 |
Q |
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||||||| |||||||| ||||| ||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||| |
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| T |
23823522 |
aatcatggttcatttctgttggatatgaccttctctactttgttgttgtgatctataggcaacaaagctatgggaattagtatt |
23823605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 124
Target Start/End: Original strand, 23831234 - 23831338
Alignment:
| Q |
20 |
caccacagtatattcacccatattagttccctacatataaacaacctttttcagctctcctccttgctttttctcttgtctatatccttccttgaacttc |
119 |
Q |
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|||||||| | | ||| |||||||||||| |||||||| |||| ||| |||| ||||||||||| || ||| |||| | ||||| |||||||||||||| |
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| T |
23831234 |
caccacagaagactcatccatattagttctctacatatcaacactcttcttcacctctcctccttcctgtttttcttctttatattcttccttgaacttc |
23831333 |
T |
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| Q |
120 |
attac |
124 |
Q |
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||||| |
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| T |
23831334 |
attac |
23831338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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