View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7333_high_12 (Length: 286)
Name: NF7333_high_12
Description: NF7333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7333_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 17 - 280
Target Start/End: Complemental strand, 21244666 - 21244403
Alignment:
| Q |
17 |
acttgcaagtacatggagataaaacttgttacttagctttttctcacctggttagcaataaacttcttaatttcttcctcggacagcgaactgttgggta |
116 |
Q |
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|||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21244666 |
acttgcaagtgcatggagataaagcttgttacttagctttttctcacctggttagcaataaacttcttaatttcttcctcggacagcgaactgttgggta |
21244567 |
T |
|
| Q |
117 |
aacgaacaacataggcaattggtacctcaccagcctcatcatcaggaaatctattgaaataagtaactcaaatatgaaatattagtagagaagtatcaat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
21244566 |
aacgaacaacataggcaattggtacctcaccagcctcatcatcaggaaatctattgaaataagtaactcaaatatgaaatattaatagagaagtatcaat |
21244467 |
T |
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| Q |
217 |
tgaaaaataattttgttgtccatcacggtgtatttatatggtgtgcgatttcattttttattag |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21244466 |
tgaaaaataattttgttgtccatcacggtgtatttatatggtgtgcgatttcattttttattag |
21244403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 17 - 260
Target Start/End: Complemental strand, 21259867 - 21259619
Alignment:
| Q |
17 |
acttgcaagtacatggagataaaacttgttacttagctttttctcacctggttagcaataaacttcttaatttcttcctcggacagcgaactgttgggta |
116 |
Q |
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||||| |||| ||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
21259867 |
acttgtaagtgcattgagataaaccttgttacttagctttttttcacctggttagcaataaacttcttaatttcttcctcggacagcgaactattgggtg |
21259768 |
T |
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| Q |
117 |
aacgaacaacataggcaattggtacctcaccagcctcatcatcaggaaatctattgaaataagtaactcaaatatgaaatattagtagagaagtatcaat |
216 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||| || | ||||| |||| || ||||||| |
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| T |
21259767 |
aacgaacaacataggcaattgaaacctcaccagcctcatcatcaggaaatctatagcaataagtaactcaaatgtgtattattaatagaaaaatatcaat |
21259668 |
T |
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| Q |
217 |
tgaaaaa-----taattttgttgtccatcacggtgtatttatatggtgt |
260 |
Q |
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||||||| | | ||||||||||| || ||| |||||||||||||| |
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| T |
21259667 |
tgaaaaacagttttaatttgttgtccaccatggtatatttatatggtgt |
21259619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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