View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7333_high_16 (Length: 240)
Name: NF7333_high_16
Description: NF7333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7333_high_16 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 44519989 - 44519766
Alignment:
| Q |
17 |
aattggttgaaaacatgaagttaaaccttaaagaacttgttccaaatcaatgaagagagaaagacacaatatgtttaacagccacataaacatttttgta |
116 |
Q |
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| T |
44519989 |
aattggttgaaaacatgaagttaaaccttaaagaacttgttccaaatcaatgaagaaagaaagacacagtatgtttaacagccacataaacatttttgta |
44519890 |
T |
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| Q |
117 |
acgaaatttatttaaagagtaacactgcaaacatttaaaaagttaaaaggatttatatgatacaaaaagaacttaaaaaccaatgtattactaacctaaa |
216 |
Q |
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|| ||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44519889 |
acaaaattcatttaaagagtaacactgcaaacatttaaaaagttaaaaggactcatatgatacaaaaagaacttaaaaaccaatgtattactaacctaaa |
44519790 |
T |
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| Q |
217 |
acttcaagactcatgatgtaattt |
240 |
Q |
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|||||||||||||||||||||||| |
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| T |
44519789 |
acttcaagactcatgatgtaattt |
44519766 |
T |
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