View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7333_high_5 (Length: 450)
Name: NF7333_high_5
Description: NF7333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7333_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 195 - 377
Target Start/End: Complemental strand, 668856 - 668669
Alignment:
| Q |
195 |
ctggattgtttgatcaacttaaaaggcagttcagtttattgtgaacttttaatttactcaactatcatnnnnnnntatttaatgctttcatgtgttttct |
294 |
Q |
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| T |
668856 |
ctggattgtttgatcaacttaaaaggcagtt-----tattgtgaacttttaatttactcaactatcataaaaaaatatttaatgctttcatgtgttttct |
668762 |
T |
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| Q |
295 |
tnnnnnnnnctacaattg-gt-----------ccaattttctggcacctcaatattgtgtaccctttgaaaatgggcatcaatcacaaggagagt |
377 |
Q |
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| T |
668761 |
taaaaaaaactacaattgtgttatttggacaaacaattttctggcacctcaatat--tgtaccctttgaaaatggacatcaatcacaaggagagt |
668669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 669020 - 669087
Alignment:
| Q |
15 |
aatatcgagacaatatatccctgatatacaatatgtggtaaacaataataaacttcctttcttctttc |
82 |
Q |
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| T |
669020 |
aatatcgagacaatatatccctgatatacaatatgtagtaaacaataataaacttcctttcttctttc |
669087 |
T |
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