View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7333_low_1 (Length: 672)
Name: NF7333_low_1
Description: NF7333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7333_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 549; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 61 - 653
Target Start/End: Original strand, 40513048 - 40513640
Alignment:
| Q |
61 |
ctataattgttgaatgtatcaaaattacataaatacccttgagcatattatctactagtaatttgatagactaaactgacaaataaaagacgcattaaac |
160 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
40513048 |
ctataattgttgaatgtatcaaaattacataaatacccttgagcatattatctactagtaatttgatagactaaactgacaaataaaagacacattaaac |
40513147 |
T |
|
| Q |
161 |
gatcaaactaaccagtggatacacttataagaatcaaactaaataactaggagacgcattttaaggatgtttcgtaattttggttaatttaggattgtag |
260 |
Q |
| |
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||||||| |||| ||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||| ||||||||| |
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| T |
40513148 |
gatcaaattaactagtggatacacttttaagaatcaaactaaataactacgagacgctttttaaggatgttttgtaattttggttaattagggattgtag |
40513247 |
T |
|
| Q |
261 |
ggacaatatctgacacattcaaggaccaaagtggccttttaaacataaacaaacagactcatatgtacctgaggaagaggcaatgcggcaataaagtcta |
360 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
40513248 |
ggacaatatctgacacattcaaggaccaaagcggccttttaaacataaacaaacagactcataggtacctgaggaagaggcaatgcggcaataaagtcta |
40513347 |
T |
|
| Q |
361 |
accaaaaacccttgctgaagtacctaagagcaatcttagaataggtaagaacaagttctcctctaccaaaaaccttggaagaaggagcaacataagctgt |
460 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40513348 |
accaaaaacccttgctgaagtacctaagagcaatcttagaataggtaagaacaagttctcctctaccaaaaaccttggaagaaggagcaacataagctgt |
40513447 |
T |
|
| Q |
461 |
acgaaacttcatacaaatctgaactatgtaaaacaaatctccaaatgatctaacaactgtgagaataacttcaagagtttttccaatatcaatgcaaact |
560 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40513448 |
acgaaacttcatacaaatctgaactatgtaaaacaaatctccaaatgatctaacaactgtgagaataacttcaagagtttttccaatatcaatgcaaact |
40513547 |
T |
|
| Q |
561 |
tcttctctaaccactggcaaataaaagaacagtggatccacaaacaaagaaactaaacatgctactaaaaatatcttgttccaacgatgtatg |
653 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40513548 |
tcttctctaaccactggcaaataaaagaacagtggatccacaaacaaagaaactaaacatgctactaaaaatatcttgttccaacgatgtatg |
40513640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 61 - 455
Target Start/End: Original strand, 40482374 - 40482768
Alignment:
| Q |
61 |
ctataattgttgaatgtatcaaaattacataaatacccttgagcatattatctactagtaatttgatagactaaactgacaaataaaagacgcattaaac |
160 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
40482374 |
ctataattgttgaatgtatcaaaattacataaatacccttgagcatattatctactagtaatttgatagactaaactgacaaataaaagacacattaaac |
40482473 |
T |
|
| Q |
161 |
gatcaaactaaccagtggatacacttataagaatcaaactaaataactaggagacgcattttaaggatgtttcgtaattttggttaatttaggattgtag |
260 |
Q |
| |
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||||||| |||| ||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||| ||||||||| |
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| T |
40482474 |
gatcaaattaactagtggatacacttttaagaatcaaactaaataactacgagacgctttttaaggatgttttgtaattttggttaattagggattgtag |
40482573 |
T |
|
| Q |
261 |
ggacaatatctgacacattcaaggaccaaagtggccttttaaacataaacaaacagactcatatgtacctgaggaagaggcaatgcggcaataaagtcta |
360 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
40482574 |
ggacaatatctgacacattcaaggaccaaagcggccttttaaacataaacaaacagactcataggtacctgaggaagaggcaatgcggcaataaagtcta |
40482673 |
T |
|
| Q |
361 |
accaaaaacccttgctgaagtacctaagagcaatcttagaataggtaagaacaagttctcctctaccaaaaaccttggaagaaggagcaacataa |
455 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40482674 |
accaaaaacccttgctgaagtacctaagagcaatcttagaataggtaagaacaagttctcctctaccaaaaaccttggaagaaggagcaacataa |
40482768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 42
Target Start/End: Original strand, 40482344 - 40482373
Alignment:
| Q |
13 |
aatatacacatttcggttcgagtcctaacc |
42 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
40482344 |
aatatacacatttcggttcgagtcctaacc |
40482373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 42
Target Start/End: Original strand, 40513018 - 40513047
Alignment:
| Q |
13 |
aatatacacatttcggttcgagtcctaacc |
42 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
40513018 |
aatatacacatttcggttcgagtcctaacc |
40513047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 410 - 643
Target Start/End: Complemental strand, 21611865 - 21611632
Alignment:
| Q |
410 |
aacaagttctcctctaccaaaaaccttggaagaaggagcaacataagctgtacgaaacttcatacaaatctgaactatgtaaaacaaatctccaaatgat |
509 |
Q |
| |
|
||||||||||||||| ||||||||| | |||||||| |||||||| || ||| ||||| |||| |||| |||| | |||||| | || ||| |||| |
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| T |
21611865 |
aacaagttctcctctcccaaaaaccctagaagaaggtgcaacatatgccgtatgaaacctcatgaaaatgtgaatgacgtaaaagacgtccgcaattgat |
21611766 |
T |
|
| Q |
510 |
ctaacaactgtgagaataacttcaagagtttttccaatatcaatgcaaacttcttctctaaccactggcaaataaaagaacagtggatccacaaacaaag |
609 |
Q |
| |
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|||| || | |||| | |||||||| | | |||||||||||||||| ||||| ||| ||| | ||||||||||||||| || |||||||||||||||| |
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| T |
21611765 |
ctaataattatgaggaaaacttcaactgctattccaatatcaatgcacacttcatcttgaactattggcaaataaaagaagagaggatccacaaacaaag |
21611666 |
T |
|
| Q |
610 |
aaactaaacatgctactaaaaatatcttgttcca |
643 |
Q |
| |
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||| |||||||||||| || || ||||||||||| |
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| T |
21611665 |
aaattaaacatgctaccaagaaaatcttgttcca |
21611632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 573 - 643
Target Start/End: Complemental strand, 28261605 - 28261535
Alignment:
| Q |
573 |
actggcaaataaaagaacagtggatccacaaacaaagaaactaaacatgctactaaaaatatcttgttcca |
643 |
Q |
| |
|
||||| || |||||||| ||||||||||||||||| |||| ||||| ||| |||| ||||| |||||||| |
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| T |
28261605 |
actggtaagtaaaagaaaagtggatccacaaacaatgaaatcaaacaagctgctaagaatattttgttcca |
28261535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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