View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7333_low_10 (Length: 325)
Name: NF7333_low_10
Description: NF7333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7333_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 16 - 306
Target Start/End: Complemental strand, 2287299 - 2287009
Alignment:
| Q |
16 |
atgagaggacataggttttgcctggaattgttctagcaacttgtgctattgcactttcttttcctgccactagttcaactgctcttgtgccttgtggaac |
115 |
Q |
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| T |
2287299 |
atgagaggacataggttttgcctggaattgttctagcaacttgtgctattgcactttcttttcctgccactagttcaactgctcttgtgccttgtggaac |
2287200 |
T |
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| Q |
116 |
tgagaaatgagctgagtctaggtattttactgcttttaaggattctaccatccatcctgggagaggtgaatggtcatcttcaatattgggtgggatgatc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2287199 |
tgagaaatgagctgagtctaggtattttactgcttttaaggattctaccatccatcctgggagaggtgaatggtcatcttcaatattgggtgggatgatc |
2287100 |
T |
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| Q |
216 |
actccatatgatgtgttgggaaaaatataaggtccttcttcaaatccaccattctttaatatgttctctgtggagtgtaaaatatgttaga |
306 |
Q |
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| T |
2287099 |
actccatatgatgtgttgggaaaaatataaggtccttcttcaaatccaccattctttaatatgttctctgtggagtgtaaaatatgttaga |
2287009 |
T |
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Back To:
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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 175
Target Start/End: Complemental strand, 44409578 - 44409458
Alignment:
| Q |
55 |
cttgtgctattgcactttcttttcctgccactagttcaactgctcttgtgccttgtggaactgagaaatgagctgagtctaggtattttactgcttttaa |
154 |
Q |
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||||||| | |||||||||||||||||| || ||||||| ||||||| | |||| ||| |||| ||| || | || || | ||||||||||||||| | |
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| T |
44409578 |
cttgtgcaagtgcactttcttttcctgctacaagttcaattgctctttttccttctggtactgtgaagtgttcagaatcaatgtattttactgctttcag |
44409479 |
T |
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| Q |
155 |
ggattctaccatccatcctgg |
175 |
Q |
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| T |
44409478 |
agattcaactatccatcctgg |
44409458 |
T |
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