View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7333_low_12 (Length: 295)
Name: NF7333_low_12
Description: NF7333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7333_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 5 - 282
Target Start/End: Complemental strand, 1329969 - 1329692
Alignment:
| Q |
5 |
atccaacaataatgtatcaaagcctccacctaatgcaggctgctggtttcctaagtggctggttgattgtaccaacgctgtttcccaatctgcactctcg |
104 |
Q |
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| T |
1329969 |
atccaacaataatgtatcaaagcctccacctaatgcaggctgctggtttcctaagtggctggttgattgtaccaacgctgtttcccaatctgcactctca |
1329870 |
T |
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| Q |
105 |
tcaaatgcatgccatggaagtgcttttattccaccttcacttgttgctggtgcagccccatcaaataaagctaaggcaagtttgtccccatgttcttcag |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
1329869 |
tcaaatgcatgccatggaagtgcttttattccaccttcacttgttgctggtgcagccccatcaaataaagctaaggctagtttgtccccatgttcttcag |
1329770 |
T |
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| Q |
205 |
ttgtcactctatcatctcctaagttcaacaaatcaccctcggtttgcacaattttttcttctttcggctcttcttctt |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
1329769 |
ttgtcactctatcatctcctaagttcaacaaatcaccctcggtttgcacaattttttcttctttcgtctcttcttctt |
1329692 |
T |
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