View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7333_low_13 (Length: 291)
Name: NF7333_low_13
Description: NF7333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7333_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 20 - 274
Target Start/End: Original strand, 43535159 - 43535418
Alignment:
| Q |
20 |
caacctatgcggaacatctccaccccaacacacatttttatttaaagctaaccccaatgagtc-----tatggaatctctcataaaaaatatcaccttcc |
114 |
Q |
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| T |
43535159 |
caacctatgcggaacatctccaccccaacacacatttttatttaaagctaaccccaatgagtctagtctatggaatctctcataaaaaatatcaccttcc |
43535258 |
T |
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| Q |
115 |
aaccaatcatctctccaaaccaattaccctccaaagatgatcatcgaaccaattttctttattagtcctcctcataccttctttaacaaagtttaaatct |
214 |
Q |
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||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
43535259 |
aaccaatgatctctccaaaccaattaccctcctaagatgatcatcgaaccaattttctttattagtcctcctcataccttctttaacaaagttcaaatct |
43535358 |
T |
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| Q |
215 |
ttcgaccacctaaaaatcattctatccaagattgatattccagtactatgtgttatattt |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43535359 |
ttcgaccacctaaaaatcattctatccaagattgatattccagtactatgtgttatattt |
43535418 |
T |
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