View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7333_low_16 (Length: 250)
Name: NF7333_low_16
Description: NF7333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7333_low_16 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 6 - 250
Target Start/End: Complemental strand, 41593239 - 41592995
Alignment:
| Q |
6 |
ctacattattctccatcaaactaagtgcaaaagataaaaataaaattgaatcacaatcatcaaccaatggaaaaacttctgcaaatcacttaaagacaat |
105 |
Q |
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| T |
41593239 |
ctacataattctccatcaaactaagtgcaaaagataaaaataaaattgaatcacaatcatcaaccaacggaaaaacttctgcaaatcacttaaagacaat |
41593140 |
T |
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| Q |
106 |
taaaatgcacatgaacgaaagcaaaattgacacaaaacaaattatattttttgaaaggacaaaagaaattatattgcataaaccatttatttagaaatag |
205 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41593139 |
taaaatgcacatgaacgaaagcaaaattgacataaaacaaattatattttttgaaaggacaaaagaaattatattgcataaaccatttatttagaaatag |
41593040 |
T |
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| Q |
206 |
cctctccacttacagtaagaaccatggcgtgagcaaagagaattt |
250 |
Q |
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| T |
41593039 |
cctctccacttacggtaagaaccatggcgtgagcaaagagaattt |
41592995 |
T |
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