View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7333_low_17 (Length: 245)

Name: NF7333_low_17
Description: NF7333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7333_low_17
NF7333_low_17
[»] chr2 (2 HSPs)
chr2 (145-226)||(40513559-40513640)
chr2 (18-130)||(31997677-31997789)
[»] chr6 (1 HSPs)
chr6 (18-129)||(31100557-31100668)
[»] chr5 (1 HSPs)
chr5 (18-130)||(7819046-7819158)
[»] chr4 (1 HSPs)
chr4 (148-216)||(21611632-21611700)
[»] chr1 (2 HSPs)
chr1 (146-216)||(28261535-28261605)
chr1 (22-119)||(7446044-7446141)


Alignment Details
Target: chr2 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 145 - 226
Target Start/End: Original strand, 40513559 - 40513640
Alignment:
Q  145 cactggcaaataaaagaacagtggatccacaaacaaagaaactaaacatgctactaaaaatatcttgttccaacgatgtatg 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40513559 cactggcaaataaaagaacagtggatccacaaacaaagaaactaaacatgctactaaaaatatcttgttccaacgatgtatg 40513640  T

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Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 31997677 - 31997789
Alignment:
Q  18 atcttgttcgccgaactcaccgcaattcaacaaggtctacgtcttgcagtagcaatgggattcgaagatttggtgtgctacacagattctccgctctcca 117  Q
    ||||||||  |||| |||||||||| |||||||||||| ||||| || || ||||||||  | |||||||||||||||||  ||||||||| ||||||||    
T  31997677 atcttgttttccgagctcaccgcaaatcaacaaggtcttcgtctagctgtggcaatgggcatagaagatttggtgtgctattcagattctctgctctcca 31997776  T
Q  118 taagactcatcac 130  Q
    |||||||| ||||    
T  31997777 taagactcctcac 31997789  T

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Target: chr6 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 18 - 129
Target Start/End: Complemental strand, 31100668 - 31100557
Alignment:
Q  18 atcttgttcgccgaactcaccgcaattcaacaaggtctacgtcttgcagtagcaatgggattcgaagatttggtgtgctacacagattctccgctctcca 117  Q
    |||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||||||||  | |||||||||||||||||  ||||||||| ||||||||    
T  31100668 atcttgtttgccgagctcaccgcaattcaacaaggtctacgtctagcagtggcaatgggcatagaagatttggtgtgctattcagattctctgctctcca 31100569  T
Q  118 taagactcatca 129  Q
    ||||||||||||    
T  31100568 taagactcatca 31100557  T

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Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 7819046 - 7819158
Alignment:
Q  18 atcttgttcgccgaactcaccgcaattcaacaaggtctacgtcttgcagtagcaatgggattcgaagatttggtgtgctacacagattctccgctctcca 117  Q
    |||||||| ||||| ||||||||||||||||||||||||||||| || || |||||| |  | |||||||||||||||||  ||||||||| ||||||||    
T  7819046 atcttgtttgccgagctcaccgcaattcaacaaggtctacgtctagctgtggcaatgagcatagaagatttggtgtgctattcagattctctgctctcca 7819145  T
Q  118 taagactcatcac 130  Q
    ||| |||||||||    
T  7819146 taacactcatcac 7819158  T

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Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 148 - 216
Target Start/End: Complemental strand, 21611700 - 21611632
Alignment:
Q  148 tggcaaataaaagaacagtggatccacaaacaaagaaactaaacatgctactaaaaatatcttgttcca 216  Q
    ||||||||||||||| || ||||||||||||||||||| |||||||||||| || || |||||||||||    
T  21611700 tggcaaataaaagaagagaggatccacaaacaaagaaattaaacatgctaccaagaaaatcttgttcca 21611632  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 216
Target Start/End: Complemental strand, 28261605 - 28261535
Alignment:
Q  146 actggcaaataaaagaacagtggatccacaaacaaagaaactaaacatgctactaaaaatatcttgttcca 216  Q
    ||||| || |||||||| ||||||||||||||||| ||||  ||||| ||| |||| ||||| ||||||||    
T  28261605 actggtaagtaaaagaaaagtggatccacaaacaatgaaatcaaacaagctgctaagaatattttgttcca 28261535  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 119
Target Start/End: Complemental strand, 7446141 - 7446044
Alignment:
Q  22 tgttcgccgaactcaccgcaattcaacaaggtctacgtcttgcagtagcaatgggattcgaagatttggtgtgctacacagattctccgctctccata 119  Q
    |||| ||||| ||||||||||||||||  ||| ||||| | || || ||||||||| | |||||  ||||||||||| |||| || | ||||||||||    
T  7446141 tgttagccgagctcaccgcaattcaacggggtttacgtttagcggtggcaatgggaatagaagaaatggtgtgctactcagactcgctgctctccata 7446044  T

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