View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7333_low_2 (Length: 574)
Name: NF7333_low_2
Description: NF7333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7333_low_2 |
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| [»] chr5 (2 HSPs) |
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| [»] scaffold0035 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 121 - 574
Target Start/End: Original strand, 5822841 - 5823288
Alignment:
| Q |
121 |
attttatcaaataacatttcttaatttggatgaaat-----aggtacgtgcctaatttggacaagggtaaggcacttcacttccttttcatcaaagcaga |
215 |
Q |
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| T |
5822841 |
attttatcaactaacatttcttaatttggttgaattgaattaggtatgtgcctaatttggacaagggtaaggcacttcacttccttttcatcaaagcaga |
5822940 |
T |
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| Q |
216 |
aacaaaaactccaagtggattagtggcacgtccagttaccacagccatctacaaaagtgaacaattcatgaaaagaccatttggcccttacaatgttcta |
315 |
Q |
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| T |
5822941 |
aacaaaaactccaagtggattagtggcacgtccagttatcaaagc----------aga-aacaattcatgaaaagaccatttgacccttacaatgttcta |
5823029 |
T |
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| Q |
316 |
acaagcccaaatgaagccatctcatgtttagattcattccaaagcatgtacactcagatgctatgtggcctcatcatgcgccatgaagttctaagagttg |
415 |
Q |
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| T |
5823030 |
acaagcccaaatgaagccatctcatgtttagattcattccaaagcatgtacactcagatgctatgtggccttatcatgcgccatgaagttctaagagttg |
5823129 |
T |
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| Q |
416 |
gagctatttttgcttctgggcttttaagagccataaaattccttcaacttaattgggcccaattagctcatgacatctccactggaaccctaaaccctaa |
515 |
Q |
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| T |
5823130 |
gagctatttttgcttctgggcttttaagagccataaaattccttcaacttaattgggcccaattagctcatgacatctccactggaaccctaaaccctaa |
5823229 |
T |
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| Q |
516 |
agtcacagacccttcaatcaaagaatgcatgtccaaaatattgaaacctgaccctgaac |
574 |
Q |
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| T |
5823230 |
aatcacagacccttcaatcaaagaatgcatgtccaaaatattgaaacctgaccctgaac |
5823288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 170 - 555
Target Start/End: Complemental strand, 5833182 - 5832797
Alignment:
| Q |
170 |
atttggacaagggtaaggcacttcacttccttttcatcaaagcagaaacaaaaactccaagtggattagtggcacgtccagttaccacagccatctacaa |
269 |
Q |
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| T |
5833182 |
atttggacaaaggaaaagcacttcactttcttttcatcaaagcagaaacaaaaactccaagtgggttagtggcacgtccagttctaacagcctactacaa |
5833083 |
T |
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| Q |
270 |
aagtgaacaattcatgaaaagaccatttggcccttacaatgttctaacaagcccaaatgaagccatctcatgtttagattcattccaaagcatgtacact |
369 |
Q |
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| T |
5833082 |
aagtgaacagtttaagaaaagaccatttgacccttacaatgtgttaacaagtccagatgaagctatcctttgtcctgattcatttcaaagcatgtatact |
5832983 |
T |
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| Q |
370 |
cagatgctatgtggcctcatcatgcgccatgaagttctaagagttggagctatttttgcttctgggcttttaagagccataaaattccttcaacttaatt |
469 |
Q |
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| T |
5832982 |
cagatgctttgtggcctaatcatgcgccatgaagttcttcgagtcggagcagttttcgcttccgggcttctcagagccattaggttccttcagctgaatt |
5832883 |
T |
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| Q |
470 |
gggcccaattagctcatgacatctccactggaaccctaaaccctaaagtcacagacccttcaatcaaagaatgcatgtccaaaata |
555 |
Q |
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| T |
5832882 |
gggctgaattagtccatgacattgaaacaggaaccctaaacccaaaaatcactgatccttctatcaaacagtgcatgtcgaaaata |
5832797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 16256666 - 16256614
Alignment:
| Q |
4 |
aggaggagttataaaattgaattgcatccaattcatcacctccatccaaactt |
56 |
Q |
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| T |
16256666 |
aggaggagtaataaaattgaattgtatccaattcatcacctccctctaaactt |
16256614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 349 - 389
Target Start/End: Original strand, 77830 - 77870
Alignment:
| Q |
349 |
tcattccaaagcatgtacactcagatgctatgtggcctcat |
389 |
Q |
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| T |
77830 |
tcattccaaagcatgtatactcaaatgctatgtggactcat |
77870 |
T |
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