View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7333_low_21 (Length: 238)
Name: NF7333_low_21
Description: NF7333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7333_low_21 |
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| [»] scaffold0085 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 982385 - 982162
Alignment:
| Q |
1 |
tttctccatt-gatccctcctaatctgcacactcctcgttctcctttgctctaaccaacaaagcttgaatgaacaacaatgaaagtgtctatttcaaaat |
99 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
982385 |
tttctccatttgatccctcctaatctgcacactcctcgttctcctttcctctaaccaacaaagcttgaatgaacaacaatgaaagtgtctatttcaaaat |
982286 |
T |
|
| Q |
100 |
tataattgatcaaccaactggattatttcataaattgattgttgtcggtgattacattttcaattttacctccctattcaacggccgacggaatgttcat |
199 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
982285 |
tataattgatcaacaaactggattatttcataaattgattgttgtcggtgattacattttcaattttacctccctgttcaacggccgacggaatgttcat |
982186 |
T |
|
| Q |
200 |
cgtctcttctcttcctcattttct |
223 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
982185 |
cgtctcttctcttcctcattttct |
982162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 24453669 - 24453446
Alignment:
| Q |
1 |
tttctccatt-gatccctcctaatctgcacactcctcgttctcctttgctctaaccaacaaagcttgaatgaacaacaatgaaagtgtctatttcaaaat |
99 |
Q |
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|||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24453669 |
tttctccatttgatccctcctaatctgcacactcctcattcttctttgctctaaccaacaaagcttgaatgaacaacaatgaaagtgtctatttcaaaat |
24453570 |
T |
|
| Q |
100 |
tataattgatcaaccaactggattatttcataaattgattgttgtcggtgattacattttcaattttacctccctattcaacggccgacggaatgttcat |
199 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
24453569 |
tataattgatcaaccaactgaattatttcataaattgattgttgtcggtgattacattttcaattttacctccttgttcaacggccgacggaatgttcat |
24453470 |
T |
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| Q |
200 |
cgtctcttctcttcctcattttct |
223 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
24453469 |
cgtctcttctcttcctcattttct |
24453446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 8376117 - 8376193
Alignment:
| Q |
18 |
cctaatctgcacactcctcgttctcctttgctctaaccaacaaagcttgaatgaacaacaatgaaagtgtctatttc |
94 |
Q |
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||||||||||||||||||| ||||||| || ||||||| ||||||||||| |||||||||| ||||||||| |||| |
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| T |
8376117 |
cctaatctgcacactcctctttctcctaagcgctaaccagcaaagcttgaaagaacaacaataaaagtgtctttttc |
8376193 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 1418246 - 1418170
Alignment:
| Q |
9 |
ttgatccctcctaatctgcacactc-ctcgttctcctttgctctaaccaacaaagcttgaatgaacaacaatgaaag |
84 |
Q |
| |
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|||||||| |||||||||||||||| | | ||||||||||| ||||||| |||| |||||| ||||||||||||||| |
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| T |
1418246 |
ttgatcccccctaatctgcacactcacaccttctcctttgcgctaaccaccaaatcttgaaagaacaacaatgaaag |
1418170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 84
Target Start/End: Original strand, 38225420 - 38225496
Alignment:
| Q |
9 |
ttgatccctcctaatctgcacactc-ctcgttctcctttgctctaaccaacaaagcttgaatgaacaacaatgaaag |
84 |
Q |
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|||||||| |||||||||||| ||| | | ||||||||||| ||||||| ||||||||||| ||||||||||||||| |
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| T |
38225420 |
ttgatcccccctaatctgcactctcacaccttctcctttgcgctaaccaccaaagcttgaaagaacaacaatgaaag |
38225496 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 87 - 129
Target Start/End: Complemental strand, 2533057 - 2533015
Alignment:
| Q |
87 |
tctatttcaaaattataattgatcaaccaactggattatttca |
129 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
2533057 |
tctatttcaaaattataattgatcaacaaactggattatttca |
2533015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 127
Target Start/End: Original strand, 21156501 - 21156541
Alignment:
| Q |
87 |
tctatttcaaaattataattgatcaaccaactggattattt |
127 |
Q |
| |
|
||||||||||||||||||||||||||| | || |||||||| |
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| T |
21156501 |
tctatttcaaaattataattgatcaacaagctagattattt |
21156541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0085 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: scaffold0085
Description:
Target: scaffold0085; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 31 - 223
Target Start/End: Complemental strand, 16569 - 16377
Alignment:
| Q |
31 |
ctcctcgttctcctttgctctaaccaacaaagcttgaatgaacaacaatgaaagtgtctatttcaaaattataattgatcaaccaactggattatttcat |
130 |
Q |
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|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
16569 |
ctcctctttctcctttgctctaaccaacaaagcttgaatgaacaacaatgaaagtgtctatttcaaaattataattgatcaacaaactggattatttcat |
16470 |
T |
|
| Q |
131 |
aaattgattgttgtcggtgattacattttcaattttacctccctattcaacggccgacggaatgttcatcgtctcttctcttcctcattttct |
223 |
Q |
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| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
16469 |
agattgattgttgtcggtgattcaattttcaattttacctccctattcaacggccgacggaatgttcatcgtctcttctctttctcattttct |
16377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 84
Target Start/End: Original strand, 1553527 - 1553603
Alignment:
| Q |
9 |
ttgatccctcctaatctgcacactc-ctcgttctcctttgctctaaccaacaaagcttgaatgaacaacaatgaaag |
84 |
Q |
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|||||||| |||||||||||| ||| | | ||||||||||| ||||||| ||||||||||| ||||||||||||||| |
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| T |
1553527 |
ttgatcccccctaatctgcactctcacaccttctcctttgcgctaaccaccaaagcttgaaagaacaacaatgaaag |
1553603 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 84
Target Start/End: Original strand, 22301314 - 22301390
Alignment:
| Q |
9 |
ttgatccctcctaatctgcacactc-ctcgttctcctttgctctaaccaacaaagcttgaatgaacaacaatgaaag |
84 |
Q |
| |
|
|||||||| |||||||||||| ||| | | ||||||||||| ||||||| ||||||||||| ||||||||||||||| |
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| T |
22301314 |
ttgatcccccctaatctgcactctcacaccttctcctttgcgctaaccaccaaagcttgaaagaacaacaatgaaag |
22301390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 24120626 - 24120702
Alignment:
| Q |
18 |
cctaatctgcacactcctcgttctcctttgctctaaccaacaaagcttgaatgaacaacaatgaaagtgtctatttc |
94 |
Q |
| |
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|||||| |||||||||||| || |||| | |||||||| |||||||||| |||||||||||||||||||| |||| |
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| T |
24120626 |
cctaatttgcacactcctctttttcctcaacgctaaccaataaagcttgaaagaacaacaatgaaagtgtctttttc |
24120702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 83
Target Start/End: Complemental strand, 27442044 - 27441999
Alignment:
| Q |
38 |
ttctcctttgctctaaccaacaaagcttgaatgaacaacaatgaaa |
83 |
Q |
| |
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||||||||||| ||||||| ||||||||||| |||||| ||||||| |
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| T |
27442044 |
ttctcctttgcgctaaccaccaaagcttgaaagaacaagaatgaaa |
27441999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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