View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7333_low_22 (Length: 236)
Name: NF7333_low_22
Description: NF7333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7333_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 49 - 228
Target Start/End: Original strand, 10538515 - 10538694
Alignment:
| Q |
49 |
tctatacaacataaaactttagactatttacaagtgaattttgttgcaattttgacaatgcaatgccatgaatctgtctgattctctcccttgatagttt |
148 |
Q |
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| T |
10538515 |
tctaaacaacataaaactttagactatctacaatagtattttgtcgcaattttgacaatgcaatgccatgaatctgtctgattctctctcttgatagttt |
10538614 |
T |
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| Q |
149 |
caacaactttcctatctcttcaaaagacagaggggtctctccattgagtccaaagtataatattacaatctcttcttctc |
228 |
Q |
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| T |
10538615 |
caacagctttcctatctcctcaaaagacaaaggggtctctccattgagtccaaagtataatcttacaatctcttcttctc |
10538694 |
T |
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Target: chr3; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 49 - 228
Target Start/End: Original strand, 10683199 - 10683378
Alignment:
| Q |
49 |
tctatacaacataaaactttagactatttacaagtgaattttgttgcaattttgacaatgcaatgccatgaatctgtctgattctctcccttgatagttt |
148 |
Q |
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||||||||||||||||||||||||||| |||||| | |||||||| |||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| |
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| T |
10683199 |
tctatacaacataaaactttagactatctacaagggtattttgttccaattttgacaatgcaataccatgaatctgtctgatcctctctcttgatagttt |
10683298 |
T |
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| Q |
149 |
caacaactttcctatctcttcaaaagacagaggggtctctccattgagtccaaagtataatattacaatctcttcttctc |
228 |
Q |
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||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
10683299 |
caacagctttcctatctcctcaaaagacaaaggggtctctccattgagtccaaagtataatcttacaatctcttcttctc |
10683378 |
T |
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