View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7333_low_24 (Length: 227)
Name: NF7333_low_24
Description: NF7333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7333_low_24 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 179; Significance: 9e-97; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 8 - 210
Target Start/End: Complemental strand, 27821591 - 27821389
Alignment:
| Q |
8 |
tcatctccaaaagccaagagcccttatcttgaaaatcttcttgtctacactcatatgagactcccttctcttccaatgcaattttcactctcattccata |
107 |
Q |
| |
|
||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27821591 |
tcatctctaaaagcaaagagcttttatcttgaaaatcttcttgtctacactcatatgagactcccttctcttccaatgcaattttcactctcattccata |
27821492 |
T |
|
| Q |
108 |
tgaacttggccaaaaatccaacaaaaccacattaccctcagccttgcaatgactcattgtgcagcttgcttgatagtttttcgtatttgtacgttgaaac |
207 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
27821491 |
tgaacttggccaaaaatccaacaaaatcacattaccctcagccttgcaatgactcattgtgcagcttgcttgatagtttttcgtatttgtatgttgaaac |
27821392 |
T |
|
| Q |
208 |
taa |
210 |
Q |
| |
|
||| |
|
|
| T |
27821391 |
taa |
27821389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 8 - 138
Target Start/End: Complemental strand, 27824571 - 27824441
Alignment:
| Q |
8 |
tcatctccaaaagccaagagcccttatcttgaaaatcttcttgtctacactcatatgagactcccttctcttccaatgcaattttcactctcattccata |
107 |
Q |
| |
|
||||||| |||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
27824571 |
tcatctctaaaagcatagagcttttatcttgaaaatcttcttgtctacattcatatgagactcccttctcttccaaagcaattttcactctcattccata |
27824472 |
T |
|
| Q |
108 |
tgaacttggccaaaaatccaacaaaaccaca |
138 |
Q |
| |
|
| ||||||||||||||||||||||||||| |
|
|
| T |
27824471 |
tacgcttggccaaaaatccaacaaaaccaca |
27824441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University