View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7333_low_25 (Length: 222)
Name: NF7333_low_25
Description: NF7333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7333_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 11 - 211
Target Start/End: Original strand, 37293267 - 37293467
Alignment:
| Q |
11 |
tcgactttggtggtagattcgtgtatgatcgatttcccaattgcatctctttctatagtagatagatcagcgtcagaattttgtgcaccagaatttaatg |
110 |
Q |
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| T |
37293267 |
tcgactctggcggtagattcgtgtatgatcgatttcccaattgcatctctttctatagtagatacatcagcgtcagaattttgtgcaccagaatttaatg |
37293366 |
T |
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| Q |
111 |
gcatctctggtttcagccccttcagatagctacaagttttaattgaatgggagtacgaggagactagtacgtttatagacttggcaaccacaggcacagg |
210 |
Q |
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| T |
37293367 |
gcatctctggtttcagccccttcagatagctacaagttttaattgaatgggagtacgaggagactagtacatttatagccttggcaaccacaggcacagg |
37293466 |
T |
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| Q |
211 |
t |
211 |
Q |
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| T |
37293467 |
t |
37293467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 48306649 - 48306736
Alignment:
| Q |
23 |
gtagattcgtgtatgatcgatttcccaattgcatctctttctatagtagatagatcagcgtcagaattttgtgcaccagaatttaatg |
110 |
Q |
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|||||||| |||||||||||||| ||| ||||| | ||||||||| ||||| || ||| |||| ||||||||||||||||| ||||| |
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| T |
48306649 |
gtagattcatgtatgatcgatttttcaactgcatatttttctatagcagatacatgagcatcagcattttgtgcaccagaatctaatg |
48306736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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