View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7333_low_3 (Length: 541)

Name: NF7333_low_3
Description: NF7333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7333_low_3
NF7333_low_3
[»] chr3 (2 HSPs)
chr3 (46-524)||(27471609-27472087)
chr3 (138-191)||(28504915-28504970)
[»] chr4 (3 HSPs)
chr4 (386-476)||(45078621-45078711)
chr4 (15-44)||(49635434-49635463)
chr4 (18-46)||(39387483-39387511)
[»] chr8 (2 HSPs)
chr8 (15-44)||(39104609-39104638)
chr8 (18-46)||(19733131-19733159)
[»] chr1 (7 HSPs)
chr1 (15-44)||(4126901-4126930)
chr1 (15-44)||(12973342-12973371)
chr1 (15-44)||(48497277-48497306)
chr1 (17-46)||(50302913-50302942)
chr1 (14-46)||(34940478-34940510)
chr1 (18-46)||(39304265-39304293)
chr1 (18-46)||(40513242-40513270)
[»] chr7 (1 HSPs)
chr7 (18-46)||(46243296-46243324)
[»] chr6 (1 HSPs)
chr6 (18-46)||(17216963-17216991)


Alignment Details
Target: chr3 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 46 - 524
Target Start/End: Original strand, 27471609 - 27472087
Alignment:
Q  46 actaaactacttgactaaaaaatcgaccacatgagattagttgnnnnnnnaaacatctcacattatattagtgttatctgacaaatatggtgttttcctt 145  Q
    |||| ||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27471609 actagactacttgactaaaaaatcgaccacatgagattagttgtttttttaaacatctcacattatattagtgttatctgacaaatatggtgttttcctt 27471708  T
Q  146 tatttcttactcattatatattatatttatcatttgagcctaagtacttgttataatggcttataaattagagcatttgataaaagttgnnnnnnnnnnn 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                
T  27471709 tatttcttactcattatatattatatttatcatttgagcctaagtacttgttataatggcttataaattagagcatttgataaaagttttttatttagtt 27471808  T
Q  246 nnnnnnn-aaatgagtttcttaaacttttaaaaatatcatctgattgaatcaaatcaaaccaacatgttgatcatcggattgatttggtttaggtcaaat 344  Q
            ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  27471809 tttcttttaaatgagtttcttaaacttttaaaaatgtcatctgattgaatcaaatcaaaccaacatgttgatcatcggtttgatttggtttaggtcaaat 27471908  T
Q  345 ctattataaagtttgcaaaacttgaaccaaaatcaaactgatgtgtttgctttagcgttcaatttatcaaactcatgttgcaaaatcgtgttgtcgcgga 444  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27471909 ctattataaagtttgcaaaacttgaaccaaa-tcaaactgatgtgtttgctttagcgttcaatttatcaaactcatgttgcaaaatcgtgttgtcgcgga 27472007  T
Q  445 agcttagaattgaagcttttataaattgcggtaaatgccactcaagatgcacgtttctcatttatgtcatgaaaccaaac 524  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27472008 agcttagaacttaagcttttataaattgcggtaaatgccactcaagatgcacgtttctcatttatgtcatgaaaccaaac 27472087  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 138 - 191
Target Start/End: Original strand, 28504915 - 28504970
Alignment:
Q  138 ttttcctttatttcttactcat--tatatattatatttatcatttgagcctaagta 191  Q
    ||||| ||||||||||||||||  |||||||||||||| | ||| |||||||||||    
T  28504915 ttttcatttatttcttactcattctatatattatatttgtgattggagcctaagta 28504970  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 386 - 476
Target Start/End: Original strand, 45078621 - 45078711
Alignment:
Q  386 tgtgtttgctttagcgttcaatttatcaaactcatgttgcaaaatcgtgttgtcgcggaagcttagaattgaagcttttataaattgcggt 476  Q
    |||||||||||||||| | || ||| ||||||||| || |||||||| |||   ||  ||||||||||||| |||||||| || |||||||    
T  45078621 tgtgtttgctttagcgatgaagttaccaaactcattttccaaaatcgcgtttctgctcaagcttagaattggagcttttaaaatttgcggt 45078711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 44
Target Start/End: Original strand, 49635434 - 49635463
Alignment:
Q  15 agtttagctcatttggtaagggataatgca 44  Q
    ||||||||||||||||||||||||||||||    
T  49635434 agtttagctcatttggtaagggataatgca 49635463  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 39387483 - 39387511
Alignment:
Q  18 ttagctcatttggtaagggataatgcata 46  Q
    |||||||||||||||||||||||||||||    
T  39387483 ttagctcatttggtaagggataatgcata 39387511  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 44
Target Start/End: Original strand, 39104609 - 39104638
Alignment:
Q  15 agtttagctcatttggtaagggataatgca 44  Q
    ||||||||||||||||||||||||||||||    
T  39104609 agtttagctcatttggtaagggataatgca 39104638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 19733159 - 19733131
Alignment:
Q  18 ttagctcatttggtaagggataatgcata 46  Q
    |||||||||||||||||||||||||||||    
T  19733159 ttagctcatttggtaagggataatgcata 19733131  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 44
Target Start/End: Original strand, 4126901 - 4126930
Alignment:
Q  15 agtttagctcatttggtaagggataatgca 44  Q
    ||||||||||||||||||||||||||||||    
T  4126901 agtttagctcatttggtaagggataatgca 4126930  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 44
Target Start/End: Complemental strand, 12973371 - 12973342
Alignment:
Q  15 agtttagctcatttggtaagggataatgca 44  Q
    ||||||||||||||||||||||||||||||    
T  12973371 agtttagctcatttggtaagggataatgca 12973342  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 44
Target Start/End: Complemental strand, 48497306 - 48497277
Alignment:
Q  15 agtttagctcatttggtaagggataatgca 44  Q
    ||||||||||||||||||||||||||||||    
T  48497306 agtttagctcatttggtaagggataatgca 48497277  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 46
Target Start/End: Complemental strand, 50302942 - 50302913
Alignment:
Q  17 tttagctcatttggtaagggataatgcata 46  Q
    ||||||||||||||||||||||||||||||    
T  50302942 tttagctcatttggtaagggataatgcata 50302913  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 34940510 - 34940478
Alignment:
Q  14 aagtttagctcatttggtaagggataatgcata 46  Q
    |||||||||||| ||||||||||||||||||||    
T  34940510 aagtttagctcacttggtaagggataatgcata 34940478  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 39304293 - 39304265
Alignment:
Q  18 ttagctcatttggtaagggataatgcata 46  Q
    |||||||||||||||||||||||||||||    
T  39304293 ttagctcatttggtaagggataatgcata 39304265  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 40513242 - 40513270
Alignment:
Q  18 ttagctcatttggtaagggataatgcata 46  Q
    |||||||||||||||||||||||||||||    
T  40513242 ttagctcatttggtaagggataatgcata 40513270  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 46243296 - 46243324
Alignment:
Q  18 ttagctcatttggtaagggataatgcata 46  Q
    |||||||||||||||||||||||||||||    
T  46243296 ttagctcatttggtaagggataatgcata 46243324  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 17216963 - 17216991
Alignment:
Q  18 ttagctcatttggtaagggataatgcata 46  Q
    |||||||||||||||||||||||||||||    
T  17216963 ttagctcatttggtaagggataatgcata 17216991  T

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