View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7333_low_4 (Length: 482)
Name: NF7333_low_4
Description: NF7333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7333_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Complemental strand, 27470958 - 27470492
Alignment:
| Q |
1 |
atttatggaccccctttctactattggatagtcaccggataactttattgtttaaagagggaccaagcatttggattgcttgaaagaattacaagggttt |
100 |
Q |
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|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||| |
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| T |
27470958 |
atttatggaccccctttccactattggatagtcactggataactttattgtttaaag--ggaccaagcatt-ggattgcttgaaagtattacaagggttt |
27470862 |
T |
|
| Q |
101 |
ataatgttaggaatcttgatagagactatggaagagagaaaattcagaagctgaaaaataatttttgtattgatatgggaaagatcattacatcaaacga |
200 |
Q |
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| T |
27470861 |
ataatgttaggaatcttgatagagactacggaagagagaaaattcagaggctgaaaa-taatttttgtattgatatgggaaaaatcattacatcaaacga |
27470763 |
T |
|
| Q |
201 |
tagaatgagaatgaatgtagaaatgtgaaattattttctgaatattattttaaagttgtaaattttaatactttaaatttaacttgcttaaatagagaca |
300 |
Q |
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|||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
27470762 |
tagaatgagactgaacatagaaatgtgaaatgattttctgaatattattttaaagttgtaaattataatgctttaaatttaacttgcttaaatagagaca |
27470663 |
T |
|
| Q |
301 |
aatctaaacctaatgagtttggctaattggtctcgtatacaaatattaatatttacaacacttcccctcaagctgatgaatgtataccaatcattcaaaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27470662 |
aatctaaacctaatgagtttggctaattggtctcgtatacaaatattaatatttacaacacttcccctcaagctgatgaatgtataccaatcattcaaaa |
27470563 |
T |
|
| Q |
401 |
cttgcaagtaagttggttaaatcgctatttcggtaaacccttcgttaacacatcggtcagctgatgtccat |
471 |
Q |
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| T |
27470562 |
cttgcaagtaagttggttaaatcgctattttggtaaacccttcgttaacacatcggtcagctgatgtccat |
27470492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 74 - 211
Target Start/End: Original strand, 28093207 - 28093341
Alignment:
| Q |
74 |
gattgcttgaaagaattacaagggtttataatgttaggaatcttgatagagactatggaagagagaaaattcagaagctgaaaaataatttttgtattga |
173 |
Q |
| |
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|||||||| | || ||||| ||||||| ||||| |||||||||||| ||| |||||||| ||||||||| || || |||||||| ||||||||||| |
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| T |
28093207 |
gattgcttaagagtattactagggtttttaatggtaggaatcttga--gagtctatggaaaagagaaaatgttcaaact-aaaaataaattttgtattga |
28093303 |
T |
|
| Q |
174 |
tatgggaaagatcattacatcaaacgatagaatgagaa |
211 |
Q |
| |
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|||| ||||| ||||||||||||| ||||||||||||| |
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| T |
28093304 |
tatgcgaaagttcattacatcaaatgatagaatgagaa |
28093341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 353 - 454
Target Start/End: Complemental strand, 4464871 - 4464770
Alignment:
| Q |
353 |
ttacaacacttcccctcaagctgatgaatgtataccaatcattcaaaacttgcaagtaagttggttaaatcgctatttcggtaaacccttcgttaacaca |
452 |
Q |
| |
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|||||||||| || ||||||||| ||||| ||| | ||||||| || |||||||||||||||||| |||| | | | ||||||||||| ||||||||| |
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| T |
4464871 |
ttacaacactccctctcaagctggtgaatagatatctatcattctaagcttgcaagtaagttggttgaatctttttgttggtaaaccctttgttaacaca |
4464772 |
T |
|
| Q |
453 |
tc |
454 |
Q |
| |
|
|| |
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|
| T |
4464771 |
tc |
4464770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 216 - 263
Target Start/End: Complemental strand, 17219599 - 17219552
Alignment:
| Q |
216 |
tgtagaaatgtgaaattattttctgaatattattttaaagttgtaaat |
263 |
Q |
| |
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||||||| |||||||| ||||||||||||||||||||||| ||||||| |
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| T |
17219599 |
tgtagaattgtgaaatgattttctgaatattattttaaagatgtaaat |
17219552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 411
Target Start/End: Complemental strand, 30996930 - 30996869
Alignment:
| Q |
350 |
tatttacaacacttcccctcaagctgatgaatgtataccaatcattcaaaacttgcaagtaa |
411 |
Q |
| |
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|||||||||||||||| ||||||||| |||||| ||| | ||||||| |||||| |||||| |
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| T |
30996930 |
tatttacaacacttcctctcaagctggtgaatggatatctatcattctcaacttgaaagtaa |
30996869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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