View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7333_low_6 (Length: 438)
Name: NF7333_low_6
Description: NF7333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7333_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 380; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 16 - 415
Target Start/End: Original strand, 36990800 - 36991199
Alignment:
| Q |
16 |
aatatcttagaagaaaatggatcactccatttatctgctgcaacttcacctcacatgtcagccactgcattgctacaaaaagctgctcaaatgggtgcaa |
115 |
Q |
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| T |
36990800 |
aatatcttagaagaaaatggatcactccatttatctgctgcaacttcacctcacatgtcagccactgcattgctacaaaaagctgctcaaatgggtgcaa |
36990899 |
T |
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| Q |
116 |
ctgtgagtaataataatgcaggtatcatgacggataaaactaccgttgctacaaacatgatggcgccgccgcagtttggtgtggtgcaacaacaaggaca |
215 |
Q |
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| T |
36990900 |
ctgtgagtaataataatgcaggtatcatgactgataaaactaccgttgctacgaacatgatggcgccgccgcagtttggtttggtgcaacaacaaggaca |
36990999 |
T |
|
| Q |
216 |
tgctttcatgaaccactacatgcaacagcaacaacaacactacaataataatttcaatgcaaatgggataataaatggaggaggtgttggaatgaatgga |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
36991000 |
tgctttcatgaaccactacatgcaacagcaacaacaacattacaataataatttcaatgcaaatgggataataaatggaggtggtgttggaatgaatgga |
36991099 |
T |
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| Q |
316 |
gttgatatgtttaatgctatattggatcaaagtaaggctttatcgaagatcattgaacaaaacaatcaaactcaaagcattaatagtgttgttggaggtg |
415 |
Q |
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| T |
36991100 |
gttgatatgtttaatgctatattggatcaaagtaaggctttatcgaagatcattgaacaaaacaatcaaactcaaagcattaatagtgttgttggaggtg |
36991199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 64 - 117
Target Start/End: Original strand, 12777563 - 12777616
Alignment:
| Q |
64 |
cctcacatgtcagccactgcattgctacaaaaagctgctcaaatgggtgcaact |
117 |
Q |
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| T |
12777563 |
cctcacatgtcagcaactgctttgcttcaaaaagcttctcaaatgggtgcaact |
12777616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 12801419 - 12801370
Alignment:
| Q |
67 |
cacatgtcagccactgcattgctacaaaaagctgctcaaatgggtgcaac |
116 |
Q |
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| T |
12801419 |
cacatgtcggcaactgcattgcttcaaaaagctgctcaaattggttcaac |
12801370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 117
Target Start/End: Original strand, 42289291 - 42289344
Alignment:
| Q |
64 |
cctcacatgtcagccactgcattgctacaaaaagctgctcaaatgggtgcaact |
117 |
Q |
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| T |
42289291 |
cctcacatgtctgccactgcattgcttcaaaaagcttctcagattggttcaact |
42289344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 300 - 381
Target Start/End: Original strand, 46621319 - 46621400
Alignment:
| Q |
300 |
tgttggaatgaatggagttgatatgtttaatgctatattggatcaaagtaaggctttatcgaagatcattgaacaaaacaat |
381 |
Q |
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|||| |||||| |||| || ||||||| ||| |||||||||||||||||||||| ||||| ||||||||||| ||||||||| |
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| T |
46621319 |
tgttagaatgagtggatttaatatgttcaattctatattggatcaaagtaaggccttatcaaagatcattgagcaaaacaat |
46621400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 116
Target Start/End: Original strand, 42899249 - 42899312
Alignment:
| Q |
53 |
ctgcaacttcacctcacatgtcagccactgcattgctacaaaaagctgctcaaatgggtgcaac |
116 |
Q |
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||||| ||||||||||||||||||| || |||||| |||| ||||| ||||| ||||||||||| |
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| T |
42899249 |
ctgcagcttcacctcacatgtcagctacagcattgttacagaaagcagctcagatgggtgcaac |
42899312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 5787666 - 5787617
Alignment:
| Q |
67 |
cacatgtcagccactgcattgctacaaaaagctgctcaaatgggtgcaac |
116 |
Q |
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||||||||||| ||||||||| | || ||||| ||||||||||||||||| |
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| T |
5787666 |
cacatgtcagctactgcattgttgcagaaagcagctcaaatgggtgcaac |
5787617 |
T |
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