View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7334_high_1 (Length: 351)
Name: NF7334_high_1
Description: NF7334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7334_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 21 - 326
Target Start/End: Original strand, 42639713 - 42640018
Alignment:
| Q |
21 |
tcaccttcaattcaataattttcagatcaatatatcacatatcttcctaaaatactgaacaagccaaagtccaactaatggcatttctgaagtcctttat |
120 |
Q |
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| T |
42639713 |
tcaccttcaattcaataattatcagatcaatatatcacatatcttcctaatatgtggaacaagccaaagtccaactaatggcatctcttaagtcctttat |
42639812 |
T |
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| Q |
121 |
cctttatattgcttaatacaaaaatatttttgggggtnnnnnnnnnnnnngattttgttttgcagttcgaagaaagcaatagaactgctaagttgtcaca |
220 |
Q |
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| T |
42639813 |
cctttatattgcttaatagaaaaatatttttcgggataaaaaaagaaaaagattttgttttacacttccaagaaagcaacagaactgctaagttgtcaca |
42639912 |
T |
|
| Q |
221 |
cttctcgagcgcccttctatataatagacacataatgcagcaaatattgctatagttctgaacagaaaatgggaaaaagttaaacataaaggtattaata |
320 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||| |
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| T |
42639913 |
cttctcgagcgcccttctatataatagacatataatgcagcaaatattgctatagttctaaacagaaaataggaaaaaattaaacataaaggtattaata |
42640012 |
T |
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| Q |
321 |
caaaca |
326 |
Q |
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|||||| |
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| T |
42640013 |
caaaca |
42640018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 21 - 265
Target Start/End: Complemental strand, 42566221 - 42565977
Alignment:
| Q |
21 |
tcaccttcaattcaataattttcagatcaatatatcacatatcttcctaaaatactgaacaagccaaagtccaactaatggcatttctgaagtcctttat |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
42566221 |
tcaccttcaattcaataattttcagatcaatatatcacatatcttcctaaaatacggaacaagctaaagtccaactaatggcatttctgaagtcctttat |
42566122 |
T |
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| Q |
121 |
cctttatattgcttaatacaaaaatatttttgggggtnnnnnnnnnnnnngattttgttttgcagttcgaagaaagcaatagaactgctaagttgtcaca |
220 |
Q |
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||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42566121 |
cctttatattgcttaatacaaaaatatttttggggataaaaaaagaaaaagattttgttttgcagttcgaagaaagcaatagaactgctaagttgtcaca |
42566022 |
T |
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| Q |
221 |
cttctcgagcgcccttctatataatagacacataatgcagcaaat |
265 |
Q |
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| T |
42566021 |
cttctcaagcgcccttctatataatagacacataatgcagcaaat |
42565977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 287 - 343
Target Start/End: Complemental strand, 42565980 - 42565924
Alignment:
| Q |
287 |
aaatgggaaaaagttaaacataaaggtattaatacaaacataaactttatattcttc |
343 |
Q |
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| T |
42565980 |
aaatgggaaaaagttaaacataaaggtattaatacaaacataaactttatattcttc |
42565924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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