View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7334_low_3 (Length: 250)
Name: NF7334_low_3
Description: NF7334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7334_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 3607046 - 3607280
Alignment:
| Q |
1 |
aaatagtttaaggaaaaggaagatttacacacagcagccacatccggtcatttcaacttgaagttatattcctagaaggagaattcttgcaacattttcc |
100 |
Q |
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| T |
3607046 |
aaatagtttaaggaaaaggaagatctacacacagcagccacatccggtcatttcaacttgaagttatattcctagaaggagaattcttgcaacattttcc |
3607145 |
T |
|
| Q |
101 |
ttatctataaacaaattaaacannnnnnnnncactggtagcctttctcatcccaaagtattgatgaatgattagtggatgcaagtttcctctatat---t |
197 |
Q |
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||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
3607146 |
ttatcaataaacaaattaaacatttttttttcactggtagcctttctcatcccaaagtattgatgaatgattagtggatgcaagtttcctctatattaat |
3607245 |
T |
|
| Q |
198 |
aatagttgaatgaatttcaataaacaggtttaattc |
233 |
Q |
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||||||||||||||||| |||||| ||||||||||| |
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| T |
3607246 |
aatagttgaatgaattt-aataaataggtttaattc |
3607280 |
T |
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