View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7335_high_2 (Length: 461)
Name: NF7335_high_2
Description: NF7335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7335_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 11 - 443
Target Start/End: Original strand, 39998109 - 39998542
Alignment:
| Q |
11 |
ttattctcacttgaatatgaaaatcaaaaggttaattattgaatgnnnnnnnnnnnn--ggttgagttattgaatggtttgacacaaaaggtttctcgca |
108 |
Q |
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| T |
39998109 |
ttattctcacttgaatatgaaaatcaaaaggttaattattgaatgttttttttttttttggttgagttattgaatggtttgacacaaaaggtttctcgca |
39998208 |
T |
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| Q |
109 |
gacaatgttacnnnnnnnnagaggatactgtgttaatgattgaatagattaacacaaaatgtttcgtgcagacaattttacttctaaataaattaagaaa |
208 |
Q |
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| T |
39998209 |
gacaatgttacttttttttagaggatactgtgttaatgattgaatagattaacacaaaatgtttcttgcagacgattttacttctaaataaattaagaaa |
39998308 |
T |
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| Q |
209 |
aatcttaatgatttagtgttaactagtatttaataatccaataaacatcactaagtcccgcattttgtttttattaaaggcacatatttctttccgtata |
308 |
Q |
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| T |
39998309 |
aatcttaatgatttagtgt-aactagtatttaataatccaataaacatcactaagtcccgcattttgtttttattaaaggcacatatttctttccgtata |
39998407 |
T |
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| Q |
309 |
agtttgtaccatatagttctgtcnnnnnnngttggtatcatgcagtccccgcgttcccaaaagtattaccaaggtgtgaaggaaaaaagaaacgaatatt |
408 |
Q |
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| T |
39998408 |
agtttgtaccatatagttctgtcaaaaaaagttggtatcatgcagtccccgcgttcccaaaagtattaccaaggtgtgaaggaaaaaagaaacgaatatt |
39998507 |
T |
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| Q |
409 |
gatatcttagattcttaattaaagccactttattc |
443 |
Q |
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| T |
39998508 |
gatatcttagattcttaattaaagtcactttattc |
39998542 |
T |
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