View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7335_high_4 (Length: 373)
Name: NF7335_high_4
Description: NF7335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7335_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 6943950 - 6944313
Alignment:
| Q |
1 |
tggattagaagaaattaaaggcaagaatattaaagaaaactaaagcactgttatatgatttctatcaaaccannnnnnnnnnnnnnattacaccggtttt |
100 |
Q |
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| T |
6943950 |
tggattagaagcaattaaaggcaagaatattaaagaaaactaaagcactgttatatgatttctatcaaaccattttttgtttttttattacaccggtttt |
6944049 |
T |
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| Q |
101 |
cagaagactatctgttggaaactggttttaagtgtaagaattcgaactgaaactcgatttgtgtcagtttacatcaaataactacctaatcac------- |
193 |
Q |
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| T |
6944050 |
cagaagactatctgttggaaactggttttaagtgtaagaattcgaactgaaactcgatttgtgtcggtttacatcaaataactatctaatcacccaaatg |
6944149 |
T |
|
| Q |
194 |
--ttgcttccttatgtatttaaaactacagcctaaggcacaaccatggcacaaactggcttatttcttacagtnnnnnnnttaatgaagactctcttgga |
291 |
Q |
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| T |
6944150 |
cattgcttccttatgcatttaaaactacagcctaaggcacaaccatggcacaaactggcttatttcttacagtaaaaaatttaatgaagactctcttgga |
6944249 |
T |
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| Q |
292 |
taaaaataaaggttcgtaattttttaagtaatttcagataggacacacattgacacatatagaa |
355 |
Q |
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| T |
6944250 |
taaaaaaaaaggtttgtaattttttaagtaatttcagataggacacacattgacacatatagaa |
6944313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 99 - 355
Target Start/End: Original strand, 6940840 - 6941093
Alignment:
| Q |
99 |
ttcagaagactatctgttggaaactggttttaagtgtaagaattcgaactgaaactcgatttgtgtcagtttacatcaaataactacctaatcacttgct |
198 |
Q |
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| T |
6940840 |
ttcagaagactatctgttggaaactggttttaattgtaagaattcgaactgaaactcgatttgtgtcagtttacct--aatcac--ccaaatgcattgct |
6940935 |
T |
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| Q |
199 |
tccttatgtatttaaaactacagcctaaggcacaaccatggcacaaactggcttatttcttacagtnnnnnnnttaatgaagactctcttggat-aaaaa |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||| |
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| T |
6940936 |
tccttatgtatttaaaactacagcctaaggcacaaccatggcacaaactggcttattacttacagtaaaaaatttaatgaagactctcttggataaaaaa |
6941035 |
T |
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| Q |
298 |
taaaggttcgtaattttttaagtaatttcagataggacacacattgacacatatagaa |
355 |
Q |
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| T |
6941036 |
aaaaggtttgtaattttttaagtaatttcagataggacacacattgacacatatagaa |
6941093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 6548907 - 6548867
Alignment:
| Q |
29 |
attaaagaaaactaaagcactgttatatgatttctatcaaa |
69 |
Q |
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| T |
6548907 |
attaaagaaaattaaagctctgttatatgatttctatcaaa |
6548867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 42151353 - 42151413
Alignment:
| Q |
1 |
tggattagaagaaattaaaggcaagaatattaaagaaaactaaagcactgttatatgattt |
61 |
Q |
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|||||||||| |||||| ||||||||||||||||||| |||||| || |||||| |||| |
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| T |
42151353 |
tggattagaaacaattaagagcaagaatattaaagaaaattaaagctcttttatataattt |
42151413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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