View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7335_low_10 (Length: 221)

Name: NF7335_low_10
Description: NF7335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7335_low_10
NF7335_low_10
[»] scaffold0019 (1 HSPs)
scaffold0019 (15-204)||(56036-56225)
[»] chr6 (13 HSPs)
chr6 (19-204)||(28190591-28190776)
chr6 (15-204)||(28327797-28327986)
chr6 (15-204)||(28505433-28505622)
chr6 (15-204)||(28524433-28524622)
chr6 (15-194)||(28238587-28238766)
chr6 (47-188)||(28245571-28245712)
chr6 (56-192)||(28141850-28141986)
chr6 (87-187)||(26813731-26813831)
chr6 (87-187)||(27216707-27216807)
chr6 (99-194)||(26863841-26863936)
chr6 (130-204)||(28154010-28154084)
chr6 (95-187)||(26658219-26658311)
chr6 (95-187)||(26764190-26764282)
[»] scaffold0038 (2 HSPs)
scaffold0038 (15-194)||(38749-38928)
scaffold0038 (47-188)||(45733-45874)
[»] chr1 (3 HSPs)
chr1 (56-181)||(26138180-26138305)
chr1 (95-165)||(266159-266229)
chr1 (70-188)||(28125496-28125614)
[»] chr4 (1 HSPs)
chr4 (71-187)||(5088881-5088997)
[»] chr8 (1 HSPs)
chr8 (115-181)||(31907324-31907390)


Alignment Details
Target: scaffold0019 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 15 - 204
Target Start/End: Original strand, 56036 - 56225
Alignment:
Q  15 aatatgaaagcctcagttcttgaagagagatcgacttcagaggtgggaaactcatgagcttgctgcaaccttcagcgttcaagatttcaagtttatttag 114  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  56036 aatatgaaagcctcagttcttgaagagaggtcgacttcagaggtgggaaactcgtgagcttgctgcaaccttccgcgttcaagatttcaagtttatttag 56135  T
Q  115 gaacccgacagatttgtgaatttcaattaaattcttacaatttttaaatgaaaatatttctaaatttgggagatcggagatgtcatgtat 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56136 gaacccgacagatttgtgaatttcaattaaattcttacaatttttaaatgaaaatatttctaaatttgggagatcggagatgtcatgtat 56225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 122; Significance: 9e-63; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 19 - 204
Target Start/End: Complemental strand, 28190776 - 28190591
Alignment:
Q  19 tgaaagcctcagttcttgaagagagatcgacttcagaggtgggaaactcatgagcttgctgcaaccttcagcgttcaagatttcaagtttatttaggaac 118  Q
    ||||||||| ||||| | ||||||| || ||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||    
T  28190776 tgaaagccttagttcgtcaagagaggtcaacttcagaggtggaaaactcataagcttgctgcaaccttcagcgttcaagacttcaagtttatttaggaac 28190677  T
Q  119 ccgacagatttgtgaatttcaattaaattcttacaatttttaaatgaaaatatttctaaatttgggagatcggagatgtcatgtat 204  Q
    || |||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||| ||| | ||||| |||||||||    
T  28190676 ccaacagatttgtgaatttcaattaaattcttacactgttgaaatgaaaatatttctaaatttgagaggttggagacgtcatgtat 28190591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 15 - 204
Target Start/End: Complemental strand, 28327986 - 28327797
Alignment:
Q  15 aatatgaaagcctcagttcttgaagagagatcgacttcagaggtgggaaactcatgagcttgctgcaaccttcagcgttcaagatttcaagtttatttag 114  Q
    ||||||||||| |||| ||| ||||||| ||||||||||  |||||||| ||||| ||||||||||||||   |||||||||||||||||||||||||||    
T  28327986 aatatgaaagcatcagctctcgaagagacatcgacttcattggtgggaatctcataagcttgctgcaaccagtagcgttcaagatttcaagtttatttag 28327887  T
Q  115 gaacccgacagatttgtgaatttcaattaaattcttacaatttttaaatgaaaatatttctaaatttgggagatcggagatgtcatgtat 204  Q
    |||||| |  ||| ||||||||||||||||||||||||||  || ||||||||||||||||||||||||||||| ||||| ||| |||||    
T  28327886 gaacccaaacgatctgtgaatttcaattaaattcttacaaccttgaaatgaaaatatttctaaatttgggagattggagacgtcgtgtat 28327797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 15 - 204
Target Start/End: Complemental strand, 28505622 - 28505433
Alignment:
Q  15 aatatgaaagcctcagttcttgaagagagatcgacttcagaggtgggaaactcatgagcttgctgcaaccttcagcgttcaagatttcaagtttatttag 114  Q
    ||||||||||| |||| ||| ||||||| ||||||||||  |||||||| ||||| ||||||||||||||   |||||||||||||||||||||||||||    
T  28505622 aatatgaaagcatcagctctcgaagagacatcgacttcattggtgggaatctcataagcttgctgcaaccagtagcgttcaagatttcaagtttatttag 28505523  T
Q  115 gaacccgacagatttgtgaatttcaattaaattcttacaatttttaaatgaaaatatttctaaatttgggagatcggagatgtcatgtat 204  Q
    |||||| |  ||| ||||||||||||||||||||||||||  || ||||||||||||||||||||||||||||| ||||| ||| |||||    
T  28505522 gaacccaaacgatctgtgaatttcaattaaattcttacaaccttgaaatgaaaatatttctaaatttgggagattggagacgtcgtgtat 28505433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 15 - 204
Target Start/End: Complemental strand, 28524622 - 28524433
Alignment:
Q  15 aatatgaaagcctcagttcttgaagagagatcgacttcagaggtgggaaactcatgagcttgctgcaaccttcagcgttcaagatttcaagtttatttag 114  Q
    ||||||||||| ||||||||||||||||| | | |||||| |||||||||||||| |||||||||||||||  ||| | ||||| || ||||||||||||    
T  28524622 aatatgaaagcatcagttcttgaagagaggttgtcttcagtggtgggaaactcataagcttgctgcaacctctagcatccaagacttgaagtttatttag 28524523  T
Q  115 gaacccgacagatttgtgaatttcaattaaattcttacaatttttaaatgaaaatatttctaaatttgggagatcggagatgtcatgtat 204  Q
    |||||| |||||||||||||| ||||||||||| | |||| ||  ||||||||||||||||||||||||||| | ||||| |||||||||    
T  28524522 gaacccaacagatttgtgaatctcaattaaattttcacaacttcgaaatgaaaatatttctaaatttgggaggttggagacgtcatgtat 28524433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 15 - 194
Target Start/End: Complemental strand, 28238766 - 28238587
Alignment:
Q  15 aatatgaaagcctcagttcttgaagagagatcgacttcagaggtgggaaactcatgagcttgctgcaaccttcagcgttcaagatttcaagtttatttag 114  Q
    |||||||||||  ||| | |||||||||| | ||| | || |||||||||||||  ||||||||||||||   ||| ||||| |||||||||||||||||    
T  28238766 aatatgaaagctccagatattgaagagaggttgacattagtggtgggaaactcaaaagcttgctgcaacccatagcattcaatatttcaagtttatttag 28238667  T
Q  115 gaacccgacagatttgtgaatttcaattaaattcttacaatttttaaatgaaaatatttctaaatttgggagatcggaga 194  Q
    |||||| |||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||| |||||    
T  28238666 gaacccaacagatttgtgaatttcaattaaattcttacagtattgaaatgaaaatatttctaaatttgggagattggaga 28238587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 47 - 188
Target Start/End: Complemental strand, 28245712 - 28245571
Alignment:
Q  47 gacttcagaggtgggaaactcatgagcttgctgcaaccttcagcgttcaagatttcaagtttatttaggaacccgacagatttgtgaatttcaattaaat 146  Q
    ||||||| || |||||||||| | ||||||||||||    |||| |||||||||| |||||||||||||||||| |||||||  ||||||||||||||||    
T  28245712 gacttcatagctgggaaactcctaagcttgctgcaattgacagcattcaagatttgaagtttatttaggaacccaacagattcatgaatttcaattaaat 28245613  T
Q  147 tcttacaatttttaaatgaaaatatttctaaatttgggagat 188  Q
    ||||||||  || |||||||||||||||||||||||||||||    
T  28245612 tcttacaaaattgaaatgaaaatatttctaaatttgggagat 28245571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 56 - 192
Target Start/End: Complemental strand, 28141986 - 28141850
Alignment:
Q  56 ggtgggaaactcatgagcttgctgcaaccttcagcgttcaagatttcaagtttatttaggaacccgacagatttgtgaatttcaattaaattcttacaat 155  Q
    ||||| |||||  |||||||||||||||  | ||| ||||||||||  ||||||||||  ||||| ||||| ||||| | |  ||||||||||||||||     
T  28141986 ggtggaaaacttgtgagcttgctgcaacgcttagcattcaagattttgagtttatttaataacccaacagaattgtgtactgtaattaaattcttacaac 28141887  T
Q  156 ttttaaatgaaaatatttctaaatttgggagatcgga 192  Q
     || |||||||||| ||||||||||||||||| ||||    
T  28141886 attgaaatgaaaatgtttctaaatttgggagaccgga 28141850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 187
Target Start/End: Complemental strand, 26813831 - 26813731
Alignment:
Q  87 cagcgttcaagatttcaagtttatttaggaacccgacagatttgtgaatttcaattaaattcttacaatttttaaatgaaaatatttctaaatttgggag 186  Q
    |||| |||||||||| ||||| | |||||||||| | ||| |  ||||||  || |||| |||| || ||||||||||||| | ||||||||||||||||    
T  26813831 cagcattcaagatttgaagttgacttaggaacccaatagaatcatgaattctaactaaactcttgcagtttttaaatgaaattttttctaaatttgggag 26813732  T
Q  187 a 187  Q
    |    
T  26813731 a 26813731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 187
Target Start/End: Complemental strand, 27216807 - 27216707
Alignment:
Q  87 cagcgttcaagatttcaagtttatttaggaacccgacagatttgtgaatttcaattaaattcttacaatttttaaatgaaaatatttctaaatttgggag 186  Q
    |||| |||||||||| ||||| | |||||||||| | ||| |  ||||||  || |||| |||| |||||||| ||||||| | ||||||||||||||||    
T  27216807 cagcattcaagatttgaagttgacttaggaacccaatagaatcatgaattgtaactaaactcttgcaatttttgaatgaaattttttctaaatttgggag 27216708  T
Q  187 a 187  Q
    |    
T  27216707 a 27216707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 194
Target Start/End: Complemental strand, 26863936 - 26863841
Alignment:
Q  99 tttcaagtttatttaggaacccgacagatttgtgaatttcaattaaattcttacaatttttaaatgaaaatatttctaaatttgggagatcggaga 194  Q
    ||||||||||||||||| |||| |  || |||||||||  ||||||||| | ||||||| ||||  | ||  ||||||||||||| ||||||||||    
T  26863936 tttcaagtttatttaggtacccaatcgagttgtgaattgtaattaaattatgacaatttataaacaacaacttttctaaatttggaagatcggaga 26863841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 204
Target Start/End: Complemental strand, 28154084 - 28154010
Alignment:
Q  130 gtgaatttcaattaaattcttacaatttttaaatgaaaatatttctaaatttgggagatcggagatgtcatgtat 204  Q
    |||||||  |||||||||  |||| ||||||| ||||||||||||||||||| ||||| | || |||||| ||||    
T  28154084 gtgaattgtaattaaatttatacattttttaattgaaaatatttctaaatttcggagaccagatatgtcaagtat 28154010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 187
Target Start/End: Complemental strand, 26658311 - 26658219
Alignment:
Q  95 aagatttcaagtttatttaggaacccgacagatttgtgaatttcaattaaattcttacaatttttaaatgaaaatatttctaaatttgggaga 187  Q
    ||||||||||||||||||||| | || || || |||||||||  |||||||||   |||||||  |||||| ||  |||||||||||| ||||    
T  26658311 aagatttcaagtttatttaggtatccaactgaattgtgaattgtaattaaattagcacaatttcgaaatgagaacttttctaaatttgagaga 26658219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 187
Target Start/End: Complemental strand, 26764282 - 26764190
Alignment:
Q  95 aagatttcaagtttatttaggaacccgacagatttgtgaatttcaattaaattcttacaatttttaaatgaaaatatttctaaatttgggaga 187  Q
    ||||||||||||||||||||| | || || || |||||||||  |||||||||   |||||||  |||||| ||  |||||||||||| ||||    
T  26764282 aagatttcaagtttatttaggtatccaactgaattgtgaattgtaattaaattagcacaatttcgaaatgagaacttttctaaatttgagaga 26764190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 15 - 194
Target Start/End: Complemental strand, 38928 - 38749
Alignment:
Q  15 aatatgaaagcctcagttcttgaagagagatcgacttcagaggtgggaaactcatgagcttgctgcaaccttcagcgttcaagatttcaagtttatttag 114  Q
    |||||||||||  ||| | |||||||||| | ||| | || |||||||||||||  ||||||||||||||   ||| ||||| |||||||||||||||||    
T  38928 aatatgaaagctccagatattgaagagaggttgacattagtggtgggaaactcaaaagcttgctgcaacccatagcattcaatatttcaagtttatttag 38829  T
Q  115 gaacccgacagatttgtgaatttcaattaaattcttacaatttttaaatgaaaatatttctaaatttgggagatcggaga 194  Q
    |||||| |||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||| |||||    
T  38828 gaacccaacagatttgtgaatttcaattaaattcttacagtattgaaatgaaaatatttctaaatttgggagattggaga 38749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 47 - 188
Target Start/End: Complemental strand, 45874 - 45733
Alignment:
Q  47 gacttcagaggtgggaaactcatgagcttgctgcaaccttcagcgttcaagatttcaagtttatttaggaacccgacagatttgtgaatttcaattaaat 146  Q
    ||||||| || |||||||||| | ||||||||||||    |||| |||||||||| |||||||||||||||||| |||||||  ||||||||||||||||    
T  45874 gacttcatagctgggaaactcctaagcttgctgcaattgacagcattcaagatttgaagtttatttaggaacccaacagattcatgaatttcaattaaat 45775  T
Q  147 tcttacaatttttaaatgaaaatatttctaaatttgggagat 188  Q
    ||||||||  || |||||||||||||||||||||||||||||    
T  45774 tcttacaaaattgaaatgaaaatatttctaaatttgggagat 45733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 56 - 181
Target Start/End: Complemental strand, 26138305 - 26138180
Alignment:
Q  56 ggtgggaaactcatgagcttgctgcaaccttcagcgttcaagatttcaagtttatttaggaacccgacagatttgtgaatttcaattaaattcttacaat 155  Q
    ||||| ||||||  ||||||| ||||||| |  || || ||| |||||||||||||||||||||| |  || |||||||||  ||||||||| |||||||    
T  26138305 ggtggaaaactctcgagcttgatgcaaccctttgcatttaaggtttcaagtttatttaggaacccaattgaattgtgaattgtaattaaattgttacaat 26138206  T
Q  156 ttttaaatgaaaatatttctaaattt 181  Q
    ||| |||||| ||  |||||||||||    
T  26138205 tttcaaatgagaacttttctaaattt 26138180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 95 - 165
Target Start/End: Original strand, 266159 - 266229
Alignment:
Q  95 aagatttcaagtttatttaggaacccgacagatttgtgaatttcaattaaattcttacaatttttaaatga 165  Q
    ||||||||||||||| ||||| |||| || || |||||||||  ||||||||||||||||| |||||||||    
T  266159 aagatttcaagtttaattaggtacccaactgaattgtgaattgtaattaaattcttacaatctttaaatga 266229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 70 - 188
Target Start/End: Original strand, 28125496 - 28125614
Alignment:
Q  70 gagcttgctgcaaccttcagcgttcaagatttcaagtttatttaggaacccgacagatttgtgaatttcaattaaattcttacaatttttaaatgaaaat 169  Q
    |||||||||||||||||| || |  |||| |||||||||||||||| |||| |  || |||||||||  ||||||||| | ||||| |  |||||| ||     
T  28125496 gagcttgctgcaaccttctgcatctaagacttcaagtttatttaggtacccaatcgaattgtgaattgtaattaaattatcacaatatgcaaatgagaac 28125595  T
Q  170 atttctaaatttgggagat 188  Q
     ||||||||||||| ||||    
T  28125596 ttttctaaatttggaagat 28125614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 187
Target Start/End: Original strand, 5088881 - 5088997
Alignment:
Q  71 agcttgctgcaaccttcagcgttcaagatttcaagtttatttaggaacccgacagatttgtgaatttcaattaaattcttacaatttttaaatgaaaata 170  Q
    ||||||| ||| |||||| |  |||||| || ||||||||||| |||||||   || |||||||||  || ||||||||||||   || |||||||| |     
T  5088881 agcttgcagcatccttcaacactcaagaatttaagtttatttaagaacccggttgaattgtgaattgtaactaaattcttacatgattgaaatgaaattt 5088980  T
Q  171 tttctaaatttgggaga 187  Q
    |||||||||||||||||    
T  5088981 tttctaaatttgggaga 5088997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 181
Target Start/End: Complemental strand, 31907390 - 31907324
Alignment:
Q  115 gaacccgacagatttgtgaatttcaattaaattcttacaatttttaaatgaaaatatttctaaattt 181  Q
    |||||| || |||| |||||||  | ||||||||||||||  |||||||||||||| ||||||||||    
T  31907390 gaacccaaccgattcgtgaattgtagttaaattcttacaacgtttaaatgaaaataattctaaattt 31907324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University