View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7335_low_2 (Length: 532)
Name: NF7335_low_2
Description: NF7335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7335_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 513; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 1 - 521
Target Start/End: Original strand, 30679021 - 30679541
Alignment:
| Q |
1 |
atctctcataggtagcattagcaaaagtagcagctataaccataacaggtccagaagcaaccaaaggacctgcaacagaaccaccaacaacctgcccctg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30679021 |
atctctcataggtagcattagcaaaagtagcagctataaccataacaggtccagaagcaaccaaaggacctgcaacagaaccaccaacaacctgcccctg |
30679120 |
T |
|
| Q |
101 |
accaccagctaaataaacagttaatccagtcgctccagccggagaaggcggaggtagaaaagctcccgaaagcgaaagtatctcgaatcttccatgaaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
30679121 |
accaccagctaaataaacagttaatccagtcgctccagccggagaaggcggaggtagaaaagctcccgaaagtgaaagtatctcgaatcttccatgaaga |
30679220 |
T |
|
| Q |
201 |
gtaataacaccaccaggagcagccggctgtctaagggttacattagctacaatgccactcccactcaaaacagacacaccgcggtgacggcggttagcaa |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
30679221 |
gtaataacaccaccaggagcagccggctgtctaagggttacattagctacaatgccactcccactcaaaaccgacacaccgcggtgacggcggttagcaa |
30679320 |
T |
|
| Q |
301 |
aggtggcaatactctccgccacatcactaccactgctgatttccaagacatggcttcttagcgcatttggggattctttggttataacaatgggtggttt |
400 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30679321 |
aggtggcaatactctccgccacatcactaccactgctgatttccaagacatggcttcttagcgcatttggggattctttggttataacaatgggtggttt |
30679420 |
T |
|
| Q |
401 |
gggtttgtttttggatcctggtggtctcccacgtggcctccgaccaccactgctactgcctggctcagatgggttttgttcttcattgttgttgtcttcc |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30679421 |
gggtttgtttttggatcctggtggtctcccacgtggcctccgaccaccactgctactgcctggctcagatgggttttgttcttcattgttgttgtcttcc |
30679520 |
T |
|
| Q |
501 |
tcttcattattgttgttgttg |
521 |
Q |
| |
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||||||||||||||||||||| |
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| T |
30679521 |
tcttcattattgttgttgttg |
30679541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 16579057 - 16578946
Alignment:
| Q |
1 |
atctctcataggtagcattagcaaaagtagcagctataaccataacaggtccagaagcaaccaaaggacctgcaacagaaccaccaacaacctgcccctg |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||| || ||||| ||||||||||| ||||| || |
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| T |
16579057 |
atctttcataggtagcattagcaaaagtagcagcaataaccataacaggtccagcagcaatcaaaggtccaacaacacttccaccaacaacttgcccttg |
16578958 |
T |
|
| Q |
101 |
accaccagctaa |
112 |
Q |
| |
|
||||| ||||| |
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|
| T |
16578957 |
tccaccggctaa |
16578946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 2 - 109
Target Start/End: Original strand, 32802839 - 32802946
Alignment:
| Q |
2 |
tctctcataggtagcattagcaaaagtagcagctataaccataacaggtccagaagcaaccaaaggacctgcaacagaaccaccaacaacctgcccctga |
101 |
Q |
| |
|
||||||||| |||||||||| ||||||||| || |||| ||||||||||||| ||||| | || || ||||| |||| ||||||||||| |||||| |
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|
| T |
32802839 |
tctctcataagtagcattagtaaaagtagcggcaataagcataacaggtccaactgcaacaagagttccaacaacacaacctccaacaacctggccctga |
32802938 |
T |
|
| Q |
102 |
ccaccagc |
109 |
Q |
| |
|
|| ||||| |
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|
| T |
32802939 |
cctccagc |
32802946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 163
Target Start/End: Original strand, 34484952 - 34485031
Alignment:
| Q |
84 |
ccaacaacctgcccctgaccaccagctaaataaacagttaatccagtcgctccagccggagaaggcggaggtagaaaagc |
163 |
Q |
| |
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|||||||||||||||||||| ||||| | ||||||||| | |||||| || ||| ||| ||||||||||| | |||||| |
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| T |
34484952 |
ccaacaacctgcccctgacctccagcaagataaacagtcagtccagtagcatcaggcggcgaaggcggaggcaaaaaagc |
34485031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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