View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7335_low_4 (Length: 380)
Name: NF7335_low_4
Description: NF7335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7335_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 31505100 - 31504738
Alignment:
| Q |
1 |
aaaagattaagtactaaacatcaaagaacgccaaattagaaatcaacacaataaaccaaaaccataataaagccttaccaagtgaagtttggaatttggc |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31505100 |
aaaagattaagtactaaacatcaaagaacgccaaattagaaatcaacacaataaaccaaaaccataataaagccttaccaagtgaagtttggaatttggc |
31505001 |
T |
|
| Q |
101 |
attttttcatctcccctaaactttttagcacgacctgaaatacacacatcaacaaagatcaaaacaatgcttggtataatttttcatgccaaatcatctt |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31505000 |
attttttcatctcccctaaactttttagcacgacctgaaatacacacatcaacaaagatcaaaacaatgcttggtataatttttcatgccaaatcatctt |
31504901 |
T |
|
| Q |
201 |
attatatgaaaatagataaaataacaaagtgactaaccaggtgtcaaaagtttctttgagaagagctttttcttaacaagtctcttcttccaatcaataa |
300 |
Q |
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|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31504900 |
attatatgaaaatagataaaattacaaagtgactaaccaggtgtcaaaagtttctttgagaagagctttttcttaacaagtctcttcttccaatcaataa |
31504801 |
T |
|
| Q |
301 |
gctgaaagaaaataccaacacaaccaccaggtttttgaaccttatccgtaatagccaaattct |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31504800 |
gctgaaagaaaataccaacacaaccaccaggtttttgaaccttatccgtaatagccaaattct |
31504738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 1699880 - 1699508
Alignment:
| Q |
1 |
aaaagattaagtactaaacatcaaagaacgccaaattagaaatcaacacaataaaccaaaaccataataaagccttaccaagtgaagtttggaatttggc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1699880 |
aaaagattaagtactaaacatcaaagaacgccaaattagaaatcaacacaataaaccaaaaccataataaagccttaccaagtgaagtttggaatttggc |
1699781 |
T |
|
| Q |
101 |
attttttcatctcccctaaactttttagcacgacctgaaatacacacatcaacaaagatcaaaacaatgcttggtataatttttcatgccaaatcatctt |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1699780 |
attttttcatctcccctaaattttttagcacgacctgaaatacatacatcaacaaagatcaaaacaatgcttggtataatttttcatgccaaatcatctt |
1699681 |
T |
|
| Q |
201 |
at-----------tatatgaaaatagataaaataacaaagtgactaaccaggtgtcaaaagtttctttgagaagagctttttcttaacaagtctcttctt |
289 |
Q |
| |
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|| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1699680 |
attataagagaattatatgaaaatagataaaattacaaagtgactaaccaggtgtcaaaagtttctttgagaagagctttttcttaacaagtctcttctt |
1699581 |
T |
|
| Q |
290 |
ccaatcaataagctgaaagaaaataccaacacaaccaccaggtttttgaaccttatccgtaatagccaaattc |
362 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
1699580 |
ccaatcaataagctgaaagaaaataccaacacaaccaccaggtttttgaaccttatccgtaacagccaaattc |
1699508 |
T |
|
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