View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7335_low_6 (Length: 315)

Name: NF7335_low_6
Description: NF7335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7335_low_6
NF7335_low_6
[»] chr2 (3 HSPs)
chr2 (17-279)||(33858496-33858757)
chr2 (54-133)||(11272549-11272628)
chr2 (69-133)||(13016037-13016101)
[»] chr8 (4 HSPs)
chr8 (52-134)||(36404050-36404132)
chr8 (52-120)||(37269843-37269911)
chr8 (54-120)||(42941259-42941325)
chr8 (66-120)||(9936427-9936481)
[»] scaffold0760 (1 HSPs)
scaffold0760 (52-120)||(1722-1790)
[»] chr4 (2 HSPs)
chr4 (54-140)||(16989625-16989712)
chr4 (54-120)||(2282262-2282328)
[»] chr6 (3 HSPs)
chr6 (54-140)||(2920915-2921002)
chr6 (54-140)||(18246525-18246612)
chr6 (52-134)||(32548928-32549009)
[»] chr7 (2 HSPs)
chr7 (54-121)||(31234744-31234811)
chr7 (66-120)||(42460101-42460155)
[»] chr3 (3 HSPs)
chr3 (54-140)||(1259272-1259359)
chr3 (54-140)||(37242560-37242647)
chr3 (54-140)||(53553630-53553716)
[»] chr1 (2 HSPs)
chr1 (66-120)||(32774127-32774181)
chr1 (59-127)||(46594856-46594924)
[»] chr5 (1 HSPs)
chr5 (75-120)||(40296118-40296163)


Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 17 - 279
Target Start/End: Complemental strand, 33858757 - 33858496
Alignment:
Q  17 caaatcatccaaactttaattgacttgatgattatttaagaaagcttccttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaaga 116  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  33858757 caaatcatccaaactttaattggcttgatgattatttaagaaagcttccttcctcttatatgagtggacttggaatcctcgagaatgtctaaatagaaga 33858658  T
Q  117 tgaacgtggctgttttttgaatctactaagggagttgggtttggttcggctccttgaagctgttgctgcaggtgnnnnnnnnggctggtccggttttaag 216  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||    
T  33858657 tgaacgtggctgtttttttaatctactaagggagttgggtttggttcggctccttgaagctgttgctgcaggtg--ttttttggctggtccggttttaag 33858560  T
Q  217 ggggg-tttttgtatagcttctgttttggtgattggctttgtccgcgcctcccttgtaactgtg 279  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33858559 gggggttttttgtatagcttctgttttggtgattggctttgtccgcgcctcccttgtaactgtg 33858496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 133
Target Start/End: Original strand, 11272549 - 11272628
Alignment:
Q  54 aagaaagcttccttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaacgtggctgttttt 133  Q
    |||| |||||| |||||||| |||||||| ||||||| |||| |||| || | ||||||||||||||||  |||||||||    
T  11272549 aagatagcttctttcctcttctatgagtgaacttggattcctagagagtgcccaaatagaagatgaacgacgctgttttt 11272628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 133
Target Start/End: Complemental strand, 13016101 - 13016037
Alignment:
Q  69 ctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaacgtggctgttttt 133  Q
    ||||| ||||||||||||||||||||  |||| || || ||||||||||||| |  |||||||||    
T  13016101 ctcttttatgagtggacttggaatccgagagagtgccttaatagaagatgaatggtgctgttttt 13016037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 52 - 134
Target Start/End: Complemental strand, 36404132 - 36404050
Alignment:
Q  52 ttaagaaagcttccttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaacgtggctgtttttt 134  Q
    |||||| ||||||||||||||| || |||||||||||||||||| |||||||| ||||||||||||||| ||| |||||||||    
T  36404132 ttaagatagcttccttcctcttctacgagtggacttggaatcctagagaatgtttaaatagaagatgaaggtgactgtttttt 36404050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 37269911 - 37269843
Alignment:
Q  52 ttaagaaagcttccttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaa 120  Q
    |||||| ||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||    
T  37269911 ttaagatagcttccttcctcttttatgagtggacttggaatcctagagaatgtcttaatagaagatgaa 37269843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 54 - 120
Target Start/End: Original strand, 42941259 - 42941325
Alignment:
Q  54 aagaaagcttccttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaa 120  Q
    |||| ||||||||||||||| ||||||||||||||||||||| |||||||||  |||||||||||||    
T  42941259 aagatagcttccttcctcttttatgagtggacttggaatcctagagaatgtcgtaatagaagatgaa 42941325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 120
Target Start/End: Original strand, 9936427 - 9936481
Alignment:
Q  66 ttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaa 120  Q
    |||||||| ||||||||||||||||| ||| || | || ||||||||||||||||    
T  9936427 ttcctcttttatgagtggacttggaaccctagacagtgcctaaatagaagatgaa 9936481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0760 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 1790 - 1722
Alignment:
Q  52 ttaagaaagcttccttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaa 120  Q
    |||||| ||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||    
T  1790 ttaagatagcttccttcctcttttatgagtggacttggaatcctagagaatgtcttaatagaagatgaa 1722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 54 - 140
Target Start/End: Original strand, 16989625 - 16989712
Alignment:
Q  54 aagaaagcttccttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaacgtggctgt-tttttgaatct 140  Q
    |||| |||||| |||||||| ||||||||||| |||||||| |||||||||||||| |||||||||||| |||||| |||||||||||    
T  16989625 aagatagcttctttcctcttctatgagtggacgtggaatccatgagaatgtctaaacagaagatgaacgcggctgtctttttgaatct 16989712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 120
Target Start/End: Original strand, 2282262 - 2282328
Alignment:
Q  54 aagaaagcttccttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaa 120  Q
    |||||||| || |||||||| ||||| ||||||| ||| ||| | ||||| ||||||||||||||||    
T  2282262 aagaaagcatcgttcctcttctatgaatggacttagaaccctagggaatgcctaaatagaagatgaa 2282328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 140
Target Start/End: Complemental strand, 2921002 - 2920915
Alignment:
Q  54 aagaaagcttccttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaacgtggctgt-tttttgaatct 140  Q
    |||| |||||| |||||||| ||||||||||| ||||||||  ||||||||||||| ||||||||||||||||| | |||||||||||    
T  2921002 aagatagcttctttcctcttttatgagtggacatggaatccacgagaatgtctaaacagaagatgaacgtggctttctttttgaatct 2920915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 140
Target Start/End: Complemental strand, 18246612 - 18246525
Alignment:
Q  54 aagaaagcttccttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaacgtggctgt-tttttgaatct 140  Q
    |||| |||||| |||||||| ||||||||||| ||||||||  ||||||||||||| |||||||||||| |||||| |||||||||||    
T  18246612 aagatagcttctttcctcttctatgagtggacgtggaatccacgagaatgtctaaacagaagatgaacgcggctgtctttttgaatct 18246525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 134
Target Start/End: Original strand, 32548928 - 32549009
Alignment:
Q  52 ttaagaaagcttccttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaacgtggctgtttttt 134  Q
    |||||| |||||| ||| |||| ||| ||||||||| ||||||| || ||||||||||||||||||||| |  ||||||||||    
T  32548928 ttaagatagcttctttc-tcttttataagtggacttagaatcctagataatgtctaaatagaagatgaagggtgctgtttttt 32549009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 54 - 121
Target Start/End: Complemental strand, 31234811 - 31234744
Alignment:
Q  54 aagaaagcttccttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaac 121  Q
    |||| |||||| |||||||| ||||||||||||||||||||  ||||||||||||| |||||||||||    
T  31234811 aagatagcttctttcctcttctatgagtggacttggaatccacgagaatgtctaaacagaagatgaac 31234744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 120
Target Start/End: Complemental strand, 42460155 - 42460101
Alignment:
Q  66 ttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaa 120  Q
    |||||||| ||||||| ||||||||||||| |||| || ||||||||||||||||    
T  42460155 ttcctcttttatgagtagacttggaatcctagagagtgcctaaatagaagatgaa 42460101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 54 - 140
Target Start/End: Complemental strand, 1259359 - 1259272
Alignment:
Q  54 aagaaagcttccttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaacgtggctgt-tttttgaatct 140  Q
    |||| |||||| |||||||| ||||||||||| ||||||||  ||||||||||||| |||||||||||  |||||| |||||||||||    
T  1259359 aagatagcttctttcctcttctatgagtggacgtggaatccacgagaatgtctaaacagaagatgaacacggctgtctttttgaatct 1259272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 54 - 140
Target Start/End: Complemental strand, 37242647 - 37242560
Alignment:
Q  54 aagaaagcttccttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaacgtggctgt-tttttgaatct 140  Q
    |||| |||||| |||||||| ||||||||||| ||||||||  ||||||||||||| |||||||||||  |||||| |||||||||||    
T  37242647 aagatagcttctttcctcttctatgagtggacgtggaatccacgagaatgtctaaacagaagatgaacacggctgtctttttgaatct 37242560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 140
Target Start/End: Complemental strand, 53553716 - 53553630
Alignment:
Q  54 aagaaagcttccttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaacgtggctgttttttgaatct 140  Q
    |||| |||||| |||||||| ||||||||||||||||||||| |||| || |||||||| ||||||| |  ||||||||||| ||||    
T  53553716 aagatagcttctttcctcttttatgagtggacttggaatcctagagagtgcctaaataggagatgaaaggcgctgttttttggatct 53553630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 66 - 120
Target Start/End: Complemental strand, 32774181 - 32774127
Alignment:
Q  66 ttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaa 120  Q
    |||||||| ||||||||||||||||||||| |||| || ||||||||||||||||    
T  32774181 ttcctcttttatgagtggacttggaatcctagagagtgcctaaatagaagatgaa 32774127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 127
Target Start/End: Complemental strand, 46594924 - 46594856
Alignment:
Q  59 agcttccttcctcttatatgagtggacttggaatccttgagaatgtctaaatagaagatgaacgtggct 127  Q
    ||||||||| ||||| || ||||||||||| ||||||  ||||||| ||||||| ||||||| ||||||    
T  46594924 agcttcctttctcttttacgagtggacttgaaatcctaaagaatgtttaaataggagatgaaagtggct 46594856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 120
Target Start/End: Complemental strand, 40296163 - 40296118
Alignment:
Q  75 tatgagtggacttggaatccttgagaatgtctaaatagaagatgaa 120  Q
    |||||||||||||||||||||  ||| |||||||||||||||||||    
T  40296163 tatgagtggacttggaatcctaaagagtgtctaaatagaagatgaa 40296118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University