View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7335_low_7 (Length: 268)
Name: NF7335_low_7
Description: NF7335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7335_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 17 - 257
Target Start/End: Complemental strand, 40484122 - 40483887
Alignment:
| Q |
17 |
tttaacaaaaacttcaacttataaatgaacacattactcagccacatgtgttttatatattatgaataaaaaattaagctgtttctcttactttgggggt |
116 |
Q |
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| T |
40484122 |
tttaacaaaaacttcaacttataaatgaacacattactcagccacatgtgttttatat-----gaataaaaaattaagctgtttctcttactttgggggt |
40484028 |
T |
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| Q |
117 |
aaatgtggttaaaactccagaaacaaattttaaggcctcatatgacgattgagcagggtctgcatagatttctagaacaggtaaccaggttctgttaaag |
216 |
Q |
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| T |
40484027 |
aaatgtggttaaaactccagaaacaaattttaaggcctcatatgacgattgagcagggtctgcatagatttctagaacaggtaaccaggttctgttaaag |
40483928 |
T |
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| Q |
217 |
tgctgatataagatgaatacattacagaaactagcacaggt |
257 |
Q |
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| T |
40483927 |
tgctgatataagatgaatacattacagaaactagcacaggt |
40483887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 40484190 - 40484129
Alignment:
| Q |
17 |
tttaacaaaaacttcaacttataaatgaacacattactcagccacatgtgttttatatatta |
78 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
40484190 |
tttaacaaaaacttcaacttataaacgaacacattactcagccacatgtgttttatatatta |
40484129 |
T |
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