View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7336_high_11 (Length: 241)
Name: NF7336_high_11
Description: NF7336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7336_high_11 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: scaffold0005 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 226112 - 226334
Alignment:
| Q |
1 |
tcttaaaaggaacaacataaaatagttaatcatctaggagatatggattaagcatgtgacaaacctctgttccagcaatacccatagcaaatccaatatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
226112 |
tcttaaaaggaacaacataaaatagttaatcatctaggagatatggattaagcatgtgacaaacctctgttccagcaatacccatagcaaatccaatatc |
226211 |
T |
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| Q |
101 |
agcttcatgcaaagctggtgcatcattggtcccatcacctgttactgccacaacttcattaaagtcattcctcaaatgtttcaccaaggtatgcttatca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
226212 |
agcttcatgcaaagctggtgcatcattggtcccatcacctgttactgccacaacttcattaaagtcattcctcaaatgtttcaccaaggtatgcttatca |
226311 |
T |
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| Q |
201 |
agtggcaatgatctagccattac |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
226312 |
agtggcaatgatctagccattac |
226334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 14591266 - 14591044
Alignment:
| Q |
1 |
tcttaaaaggaacaacataaaatagttaatcatctaggagatatggattaagcatgtgacaaacctctgttccagcaatacccatagcaaatccaatatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14591266 |
tcttaaaaggaacaacataaaatagttaatcatctaggagatatggattaagcatgtgacaaacctctgttccagcaatacccatagcaaatccaatatc |
14591167 |
T |
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| Q |
101 |
agcttcatgcaaagctggtgcatcattggtcccatcacctgttactgccacaacttcattaaagtcattcctcaaatgtttcaccaaggtatgcttatca |
200 |
Q |
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| T |
14591166 |
agcttcatgcaaagctggtgcatcattggtcccatcacctgttactgccacaacttcattaaagtcattcctcaaatgtttcaccaaggtatgcttatca |
14591067 |
T |
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| Q |
201 |
agtggcaatgatctagccattac |
223 |
Q |
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| T |
14591066 |
agtggcaatgatctagccattac |
14591044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 63 - 157
Target Start/End: Original strand, 39950483 - 39950577
Alignment:
| Q |
63 |
acctctgttccagcaatacccatagcaaatccaatatcagcttcatgcaaagctggtgcatcattggtcccatcacctgttactgccacaacttc |
157 |
Q |
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| T |
39950483 |
acctcagttccagcaattcccattgcaagtccgatatcagcttcatgaagggctggagcatcatttgttccatcaccagttacagccacaacttc |
39950577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 223
Target Start/End: Complemental strand, 1626071 - 1625907
Alignment:
| Q |
59 |
acaaacctctgttccagcaatacccatagcaaatccaatatcagcttcatgcaaagctggtgcatcattggtcccatcacctgttactgccacaacttca |
158 |
Q |
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||||||||| ||||| ||||| ||||| |||| |||||| || | ||||||| || || ||||| ||||| |||||||| || || || ||||| ||| |
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| T |
1626071 |
acaaacctcggttccggcaatgcccatggcaagtccaatgtctgactcatgcagtgcaggagcatcgttggttccatcaccagtaacagctacaacctca |
1625972 |
T |
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| Q |
159 |
ttaaagtcattcctcaaatgtttcaccaaggtatgcttatcaagtggcaatgatctagccattac |
223 |
Q |
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| T |
1625971 |
ccaaacatattcctcaaacgggttaccaaggtatgcttgtcaagaggcaaggatcgtgccattac |
1625907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 63 - 157
Target Start/End: Complemental strand, 5420264 - 5420170
Alignment:
| Q |
63 |
acctctgttccagcaatacccatagcaaatccaatatcagcttcatgcaaagctggtgcatcattggtcccatcacctgttactgccacaacttc |
157 |
Q |
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||||| ||||||||||||||||| |||| |||||| || |||||||| | |||||||||||||| ||||||||||| ||||| || |||||||| |
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| T |
5420264 |
acctcagttccagcaatacccatggcaagtccaatgtctgcttcatgaagggctggtgcatcatttgtcccatcaccagttacagctacaacttc |
5420170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 199
Target Start/End: Complemental strand, 47489237 - 47489096
Alignment:
| Q |
58 |
gacaaacctctgttccagcaatacccatagcaaatccaatatcagcttcatgcaaagctggtgcatcattggtcccatcacctgttactgccacaacttc |
157 |
Q |
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|||| ||||| ||||||||||| ||||| |||| ||||||||| |||||||| | ||||| |||||||| || |||||||| || ||||| ||||| || |
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| T |
47489237 |
gacatacctcggttccagcaatgcccattgcaagtccaatatccgcttcatgaagtgctggcgcatcatttgtaccatcaccagtaactgcaacaacctc |
47489138 |
T |
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| Q |
158 |
attaaagtcattcctcaaatgtttcaccaaggtatgcttatc |
199 |
Q |
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| ||| ||||||| |||||||| | |||||||||||| |
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| T |
47489137 |
ttcaaatgttgtcctcaagtgtttcactagggtatgcttatc |
47489096 |
T |
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