View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7336_high_3 (Length: 464)
Name: NF7336_high_3
Description: NF7336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7336_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 228 - 448
Target Start/End: Complemental strand, 51881759 - 51881540
Alignment:
| Q |
228 |
gttgagggcaatgtccagtcatcagtacatagagagaccaaatcatttctttctacccttcttcatatttagtaaaaggatcctcctcatcactctttac |
327 |
Q |
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| T |
51881759 |
gttgagggcaatgtccagtcatcagtacatagagagaccaaatcatttctttctacccttcttcatattgagtaaaaggatcctcctcatcactctttac |
51881660 |
T |
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| Q |
328 |
aacatataaagattacccttctgcccaacagagcaaataacccttttctatgattcttttgaccatgttcagttgagtgtcatcattatataaatatttt |
427 |
Q |
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|||||||||||||||||||| ||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51881659 |
aacatataaagattacccttgtgcccaacagatcaaataa-ccttttccatgattcttttgaccatgttcagttgagtgtcatcattatataaatatttt |
51881561 |
T |
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| Q |
428 |
cctttagcttaagtacacact |
448 |
Q |
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||||||||||||||||||||| |
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| T |
51881560 |
cctttagcttaagtacacact |
51881540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 51881983 - 51881794
Alignment:
| Q |
1 |
caaatggttgcactccaacgtgaggtcccaaccaacaaaggcagagcattgccccaaacaaaacaatggtctcacatgttcataatagtagtggctcccc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |
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| T |
51881983 |
caaatggttgcactccaacgtgaggtcccaaccaacaaaggcagagcattgccccaaacaaaacaatggtctcacatgttcataatagtggtggct--cc |
51881886 |
T |
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| Q |
101 |
ctccctttgcctaatgattcaatttctatagcagctttcacacacgagtagaaagtgaagagtgaagggaagggagtggaatctgtttatgt |
192 |
Q |
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| T |
51881885 |
ctccctttgcctaatgattcaatttctgcagcagctttcacacacgagtagaaagtgaagagtgaagggaagggagtggaatctgtttatgt |
51881794 |
T |
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