View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7336_high_5 (Length: 411)
Name: NF7336_high_5
Description: NF7336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7336_high_5 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 21 - 411
Target Start/End: Complemental strand, 35254078 - 35253676
Alignment:
| Q |
21 |
cgagagagttagatatagaacctggtgttaatttcttcaaagattgacccatcttttgtttggatttgacttaaaagagatgagactcgtgacaatgagg |
120 |
Q |
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| T |
35254078 |
cgagagagttagatatagaacctggtgttaatttcttcaaagattgacccatcttttgtttggatttgacttaaaagagatgagactcgtgacaatgagg |
35253979 |
T |
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| Q |
121 |
tagatatatggcaactgagaaacataaattagaggacctttataaagaataaaagctgaataaaacttgtttccttgggtagagaacattggatatctta |
220 |
Q |
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| T |
35253978 |
tagatatatggcaactgagaaacaaaaattagaggacctttataaagaataaaagctgaataaaacttgtttccttgggtagagaacattggatatctta |
35253879 |
T |
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| Q |
221 |
agtaacaagcaaatttattacaaaagaaatgaatcttaattattcaaatattgttcttgacttcttgttctcatcaccaattacttcttgataaagattg |
320 |
Q |
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| T |
35253878 |
agtaacaagcaaatttattacaaaagaaatgaatcttaattattcaaatattgttcttgacttcttgttctcatcaccaattacttcttgataaagattg |
35253779 |
T |
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| Q |
321 |
ggagtggctcctaagctaattatcaa------------aacaataatggtcaaaaatgtttttggtccttctggtaaagatatttcaattttttgtttta |
408 |
Q |
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| T |
35253778 |
ggagtggctcctaagctaattatcaaaataataatagtaataataatggtaaaaaatgtttttggtccttctggtaaaattatttcaattttttgtttta |
35253679 |
T |
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| Q |
409 |
gtc |
411 |
Q |
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| T |
35253678 |
gtc |
35253676 |
T |
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