View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7336_low_10 (Length: 296)

Name: NF7336_low_10
Description: NF7336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7336_low_10
NF7336_low_10
[»] chr1 (2 HSPs)
chr1 (45-282)||(45764878-45765118)
chr1 (165-226)||(36904655-36904715)
[»] chr8 (8 HSPs)
chr8 (159-236)||(26442009-26442086)
chr8 (157-234)||(9577686-9577763)
chr8 (159-234)||(13011029-13011104)
chr8 (159-234)||(13135572-13135647)
chr8 (159-233)||(18668981-18669055)
chr8 (159-232)||(13117838-13117911)
chr8 (159-234)||(13009789-13009864)
chr8 (166-226)||(40977239-40977299)
[»] chr4 (7 HSPs)
chr4 (156-233)||(56435056-56435133)
chr4 (159-234)||(56191433-56191508)
chr4 (159-233)||(23458689-23458763)
chr4 (158-232)||(42636393-42636467)
chr4 (165-226)||(20916803-20916863)
chr4 (174-226)||(31032755-31032806)
chr4 (174-226)||(35534150-35534201)
[»] scaffold0971 (1 HSPs)
scaffold0971 (159-235)||(1336-1412)
[»] chr7 (6 HSPs)
chr7 (159-235)||(48918555-48918631)
chr7 (159-232)||(41866262-41866335)
chr7 (159-233)||(28261754-28261828)
chr7 (166-226)||(31656835-31656895)
chr7 (166-226)||(23424410-23424470)
chr7 (166-226)||(29218221-29218281)
[»] chr2 (4 HSPs)
chr2 (159-234)||(2388806-2388881)
chr2 (165-226)||(35514112-35514172)
chr2 (165-226)||(3449565-3449625)
chr2 (165-226)||(38377299-38377359)
[»] chr6 (1 HSPs)
chr6 (159-232)||(29022863-29022936)
[»] chr5 (4 HSPs)
chr5 (156-232)||(16946299-16946375)
chr5 (159-232)||(15369476-15369549)
chr5 (176-226)||(19732085-19732135)
chr5 (166-226)||(34693767-34693827)
[»] scaffold0899 (1 HSPs)
scaffold0899 (158-235)||(2450-2527)
[»] chr3 (4 HSPs)
chr3 (165-226)||(26379276-26379336)
chr3 (165-226)||(29383688-29383748)
chr3 (166-226)||(30952573-30952633)
chr3 (166-226)||(30968385-30968445)


Alignment Details
Target: chr1 (Bit Score: 144; Significance: 9e-76; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 45 - 282
Target Start/End: Original strand, 45764878 - 45765118
Alignment:
Q  45 tggtcacaattcaaaaactgtgctccttaaacattggtaattgagttcaagggtgtaaataggaggtaccaaaa--gcaagtggtgcaaaatataaggaa 142  Q
    ||||||||||||||| |||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||  |||||||||||||| ||| |||||    
T  45764878 tggtcacaattcaaatactgtgttccttaaacattgataattgagttcaagggtataaataggaggtaccaaaaaagcaagtggtgcaaa-tattaggaa 45764976  T
Q  143 aaaaga--tctgctgaattggctttgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacgaaaccatcgtgat 240  Q
    ||||||  ||||  |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||     
T  45764977 aaaagacctctgaagaattggcttcgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacgaaaccgttgtgac 45765076  T
Q  241 tgaaggtcgtaaacaaataataaaataatgctacatgatgtc 282  Q
        ||| ||||||||||||| ||||||||||||||||||||    
T  45765077 atgtggttgtaaacaaataatgaaataatgctacatgatgtc 45765118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 36904655 - 36904715
Alignment:
Q  165 tgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccac 226  Q
    ||||| || |||||| ||||||||| ||||||| ||||| ||||||||||| ||||||||||    
T  36904655 tgcccaggatcgaactggagacctttagtgtgtaagactaacgtgataacc-actacaccac 36904715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 6e-34; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 26442009 - 26442086
Alignment:
Q  159 tggctttgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacgaaaccatcg 236  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26442009 tggcttcgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacgaaaccatcg 26442086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 157 - 234
Target Start/End: Complemental strand, 9577763 - 9577686
Alignment:
Q  157 attggctttgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacgaaaccat 234  Q
    |||||||| |||| |||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9577763 attggcttcgcccaggtttgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaaccat 9577686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 159 - 234
Target Start/End: Original strand, 13011029 - 13011104
Alignment:
Q  159 tggctttgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacgaaaccat 234  Q
    |||||| |||| |||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13011029 tggcttcgcccaggtttgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaaccat 13011104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 159 - 234
Target Start/End: Complemental strand, 13135647 - 13135572
Alignment:
Q  159 tggctttgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacgaaaccat 234  Q
    |||||| |||| || |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13135647 tggcttcgcccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaaccat 13135572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 159 - 233
Target Start/End: Original strand, 18668981 - 18669055
Alignment:
Q  159 tggctttgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacca 233  Q
    |||||| |||| || |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18668981 tggcttcgcccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacca 18669055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 159 - 232
Target Start/End: Complemental strand, 13117911 - 13117838
Alignment:
Q  159 tggctttgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacc 232  Q
    |||||| |||| || |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  13117911 tggcttcgcccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacc 13117838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 159 - 234
Target Start/End: Original strand, 13009789 - 13009864
Alignment:
Q  159 tggctttgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacgaaaccat 234  Q
    |||||| |||| || |||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  13009789 tggcttcgcccaggctcgaactggggaccttcagtgtgttagactgacgtaataaccaactacaccacgaaaccat 13009864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 40977239 - 40977299
Alignment:
Q  166 gcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccac 226  Q
    ||||||||||||||||| |||||  ||||||| |||||  |||||||||| ||||||||||    
T  40977239 gcccgggttcgaaccggggacctctagtgtgtgagactagcgtgataaccgactacaccac 40977299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 6e-34; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 156 - 233
Target Start/End: Complemental strand, 56435133 - 56435056
Alignment:
Q  156 aattggctttgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacca 233  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56435133 aattggcttcgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacca 56435056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 159 - 234
Target Start/End: Original strand, 56191433 - 56191508
Alignment:
Q  159 tggctttgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacgaaaccat 234  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56191433 tggcttcgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacgaaaccat 56191508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 159 - 233
Target Start/End: Original strand, 23458689 - 23458763
Alignment:
Q  159 tggctttgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacca 233  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23458689 tggcttcgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacca 23458763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 158 - 232
Target Start/End: Complemental strand, 42636467 - 42636393
Alignment:
Q  158 ttggctttgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacc 232  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42636467 ttggcttcgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacc 42636393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 20916803 - 20916863
Alignment:
Q  165 tgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccac 226  Q
    ||||| || |||||| ||||||||||||||||| ||||||||||||||||| ||||||||||    
T  20916803 tgcccaggatcgaactggagaccttcagtgtgtaagactgacgtgataacc-actacaccac 20916863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 174 - 226
Target Start/End: Complemental strand, 31032806 - 31032755
Alignment:
Q  174 tcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccac 226  Q
    |||||| ||||||||||||||||| ||||||||||||||||| ||||||||||    
T  31032806 tcgaactggagaccttcagtgtgtaagactgacgtgataacc-actacaccac 31032755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 226
Target Start/End: Complemental strand, 35534201 - 35534150
Alignment:
Q  174 tcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccac 226  Q
    |||||| ||||||||| ||||||| ||||| ||||||||||| ||||||||||    
T  35534201 tcgaactggagacctttagtgtgtaagactaacgtgataacc-actacaccac 35534150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0971 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0971
Description:

Target: scaffold0971; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 159 - 235
Target Start/End: Original strand, 1336 - 1412
Alignment:
Q  159 tggctttgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacgaaaccatc 235  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1336 tggcttcgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacgaaaccatc 1412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 159 - 235
Target Start/End: Original strand, 48918555 - 48918631
Alignment:
Q  159 tggctttgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacgaaaccatc 235  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48918555 tggcttcgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacgaaaccatc 48918631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 159 - 232
Target Start/End: Original strand, 41866262 - 41866335
Alignment:
Q  159 tggctttgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacc 232  Q
    |||||| |||| || |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  41866262 tggcttcgcccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacc 41866335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 159 - 233
Target Start/End: Original strand, 28261754 - 28261828
Alignment:
Q  159 tggctttgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacca 233  Q
    |||||| |||| || | |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28261754 tggcttcgcccaggctagaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacca 28261828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 31656835 - 31656895
Alignment:
Q  166 gcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccac 226  Q
    |||| ||||||||| || |||||| ||||||| ||||| ||||||||||||||||||||||    
T  31656835 gcccaggttcgaactggggacctttagtgtgtgagactaacgtgataaccaactacaccac 31656895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 23424410 - 23424470
Alignment:
Q  166 gcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccac 226  Q
    ||||||||||||||||| |||||  ||||||| |||||  |||||||||| ||||||||||    
T  23424410 gcccgggttcgaaccggggacctctagtgtgtgagactagcgtgataaccgactacaccac 23424470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 29218221 - 29218281
Alignment:
Q  166 gcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccac 226  Q
    |||| ||||||||| || |||||  ||||||| |||||  |||||||||||||||||||||    
T  29218221 gcccaggttcgaactggggacctctagtgtgtgagactagcgtgataaccaactacaccac 29218281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 9e-33; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 159 - 234
Target Start/End: Complemental strand, 2388881 - 2388806
Alignment:
Q  159 tggctttgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacgaaaccat 234  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2388881 tggcttcgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacgaaaccat 2388806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 35514172 - 35514112
Alignment:
Q  165 tgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccac 226  Q
    ||||| || |||||| ||||||||||||||||| ||||||||||||||||| ||||||||||    
T  35514172 tgcccaggatcgaactggagaccttcagtgtgtaagactgacgtgataacc-actacaccac 35514112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 3449565 - 3449625
Alignment:
Q  165 tgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccac 226  Q
    ||||| || |||||| ||||||||| ||||||| ||||| ||||||||||| ||||||||||    
T  3449565 tgcccaggatcgaactggagacctttagtgtgtaagactaacgtgataacc-actacaccac 3449625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 38377359 - 38377299
Alignment:
Q  165 tgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccac 226  Q
    ||||| || |||||| ||||||||| ||||||| ||||| ||||||||||| ||||||||||    
T  38377359 tgcccaggatcgaactggagacctttagtgtgtaagactaacgtgataacc-actacaccac 38377299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 159 - 232
Target Start/End: Complemental strand, 29022936 - 29022863
Alignment:
Q  159 tggctttgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacc 232  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29022936 tggcttcgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacc 29022863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 156 - 232
Target Start/End: Original strand, 16946299 - 16946375
Alignment:
Q  156 aattggctttgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacc 232  Q
    ||||||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16946299 aattggcttcgcccggactcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacc 16946375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 159 - 232
Target Start/End: Complemental strand, 15369549 - 15369476
Alignment:
Q  159 tggctttgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacc 232  Q
    |||||| |||| || |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  15369549 tggcttcgcccaggctcgaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacc 15369476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 176 - 226
Target Start/End: Original strand, 19732085 - 19732135
Alignment:
Q  176 gaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccac 226  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19732085 gaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccac 19732135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 34693767 - 34693827
Alignment:
Q  166 gcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccac 226  Q
    ||||||||||||||||| |||||  ||||||| |||||  |||||||||||||||||||||    
T  34693767 gcccgggttcgaaccggggacctctagtgtgtgagactagcgtgataaccaactacaccac 34693827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0899 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0899
Description:

Target: scaffold0899; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 158 - 235
Target Start/End: Complemental strand, 2527 - 2450
Alignment:
Q  158 ttggctttgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacgaaaccatc 235  Q
    ||||||| |||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2527 ttggcttcgccctggttcaaactggagaccttcagtgtgttagactgacgtgataaccaactacaccactaaaccatc 2450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 26379276 - 26379336
Alignment:
Q  165 tgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccac 226  Q
    ||||| || |||||| ||||||||||||||||| ||||||||||||||||| ||||||||||    
T  26379276 tgcccaggatcgaactggagaccttcagtgtgtaagactgacgtgataacc-actacaccac 26379336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 29383748 - 29383688
Alignment:
Q  165 tgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccac 226  Q
    ||||| || |||||| ||||||||||||||||| ||||||||||||||||| ||||||||||    
T  29383748 tgcccaggatcgaactggagaccttcagtgtgtaagactgacgtgataacc-actacaccac 29383688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 30952573 - 30952633
Alignment:
Q  166 gcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccac 226  Q
    ||||||||||||||||| |||||  ||||||| |||||  |||||||||| ||||||||||    
T  30952573 gcccgggttcgaaccggggacctctagtgtgtgagactagcgtgataaccgactacaccac 30952633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 30968385 - 30968445
Alignment:
Q  166 gcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccac 226  Q
    ||||||||||||||||| |||||  ||||||| |||||  |||||||||| ||||||||||    
T  30968385 gcccgggttcgaaccggggacctctagtgtgtgagactagcgtgataaccgactacaccac 30968445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University