View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7336_low_13 (Length: 244)
Name: NF7336_low_13
Description: NF7336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7336_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 42293759 - 42293981
Alignment:
| Q |
1 |
tgatccaaaaaatgtacttgagagactccaaattgcatctttgtatcaattaacaacattgaagtttagttgtatgcaatatcttgtgaaatttggtaaa |
100 |
Q |
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| T |
42293759 |
tgatccaaaaaatgtacttgagagactccaaattgcatctttgtatcaattaacaacattgaagtttagttgtatgcaatatcttgtgaaatttggcaaa |
42293858 |
T |
|
| Q |
101 |
atatatgatattcagggtgatttaagttcattcttgcaaactgctgatagagatttgatatgcgaagtcttcaatgaaattcttgatgcttggaaaaagt |
200 |
Q |
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| T |
42293859 |
atatatgatattcagggtgatttaagttcattcttgcaaactgctgatagagatttgatatgcgaagtcttcaatgaaattcttgatgcttggaaaaagt |
42293958 |
T |
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| Q |
201 |
gatatagatagatcttccaaattttta |
227 |
Q |
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||| |||||||||||||||||||| |
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| T |
42293959 |
gat----atagatcttccaaattttta |
42293981 |
T |
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