View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7336_low_16 (Length: 222)
Name: NF7336_low_16
Description: NF7336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7336_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 33302488 - 33302693
Alignment:
| Q |
1 |
ttcttctgcctcattcacttgctcccagtaattttcagtaattgtaccatcctcatctggtctataccctactcccattctgtacttatatttgtgaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33302488 |
ttcttctgcctcattcacttgctcccagtaattttcagtaattgtaccatcctcatctggtctataccctactcccattctgtatttatatttgtgaaca |
33302587 |
T |
|
| Q |
101 |
tttcttgccatagcaatagtctgctcgaaaaaaggttcccatgataaggtaccatccatgatcacatctcgccctttgtttagagccgtcacaagtacag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33302588 |
tttcttgccatagcaatagtctgctcgaaaaaaggttcccatgataaggtaccgtccatgatcacatctcgccctttgtttagagccgtcacaagtacag |
33302687 |
T |
|
| Q |
201 |
atgatg |
206 |
Q |
| |
|
|||||| |
|
|
| T |
33302688 |
atgatg |
33302693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 33250577 - 33250782
Alignment:
| Q |
1 |
ttcttctgcctcattcacttgctcccagtaattttcagtaattgtaccatcctcatctggtctataccctactcccattctgtacttatatttgtgaaca |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |||||||||||||| || || | |||| ||||| |||||||||||||||| |||||||||| |
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|
| T |
33250577 |
ttcttctccctcattcacttgctcccagtaattttcattaattgtaccatccgcagctactttatatcctacccccattctgtacttatgtttgtgaaca |
33250676 |
T |
|
| Q |
101 |
tttcttgccatagcaatagtctgctcgaaaaaaggttcccatgataaggtaccatccatgatcacatctcgccctttgtttagagccgtcacaagtacag |
200 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||| |||| || |
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| T |
33250677 |
tttcttgccatagcaatagtctgctccacaaaaggttcccatgataaggtaccgtccataatcacatctcgccctttgtttagagccgccactagtagag |
33250776 |
T |
|
| Q |
201 |
atgatg |
206 |
Q |
| |
|
|||||| |
|
|
| T |
33250777 |
atgatg |
33250782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 33270749 - 33270954
Alignment:
| Q |
1 |
ttcttctgcctcattcacttgctcccagtaattttcagtaattgtaccatcctcatctggtctataccctactcccattctgtacttatatttgtgaaca |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |||||||||||||| || || | |||| ||||| |||||||||||||||| |||||||||| |
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|
| T |
33270749 |
ttcttctccctcattcacttgctcccagtaattttcattaattgtaccatccgcagctactttatatcctacccccattctgtacttatgtttgtgaaca |
33270848 |
T |
|
| Q |
101 |
tttcttgccatagcaatagtctgctcgaaaaaaggttcccatgataaggtaccatccatgatcacatctcgccctttgtttagagccgtcacaagtacag |
200 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||| |||| || |
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|
| T |
33270849 |
tttcttgccatagcaatagtctgctccacaaaaggttcccatgataaggtaccgtccataatcacatctcgccctttgtttagagccgccactagtagag |
33270948 |
T |
|
| Q |
201 |
atgatg |
206 |
Q |
| |
|
|||||| |
|
|
| T |
33270949 |
atgatg |
33270954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 33310474 - 33310679
Alignment:
| Q |
1 |
ttcttctgcctcattcacttgctcccagtaattttcagtaattgtaccatcctcatctggtctataccctactcccattctgtacttatatttgtgaaca |
100 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||| || ||||| ||||| | | || |||||| ||| ||||||| ||| |||||||||||| | |
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|
| T |
33310474 |
ttcttctgcttcattcacttgctcccaataattttcggttattgtcccatctttagcttctctatatcctggccccattcgatacctatatttgtgaata |
33310573 |
T |
|
| Q |
101 |
tttcttgccatagcaatagtctgctcgaaaaaaggttcccatgataaggtaccatccatgatcacatctcgccctttgtttagagccgtcacaagtacag |
200 |
Q |
| |
|
|||||||||||||| ||||| ||||| | |||||||||||||||||||||||||||||||| ||||||||| || || |||||||| ||||| || | || |
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|
| T |
33310574 |
tttcttgccatagctatagtttgctctacaaaaggttcccatgataaggtaccatccatgaccacatctcgtcccttatttagagctgtcactagcagag |
33310673 |
T |
|
| Q |
201 |
atgatg |
206 |
Q |
| |
|
|||||| |
|
|
| T |
33310674 |
atgatg |
33310679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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