View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7336_low_2 (Length: 579)

Name: NF7336_low_2
Description: NF7336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7336_low_2
NF7336_low_2
[»] chr5 (3 HSPs)
chr5 (4-460)||(18542281-18542727)
chr5 (505-564)||(18541624-18541683)
chr5 (509-554)||(28452596-28452641)
[»] chr1 (1 HSPs)
chr1 (516-550)||(32722234-32722268)
[»] chr6 (2 HSPs)
chr6 (516-558)||(32908382-32908424)
chr6 (526-558)||(27832653-27832685)
[»] chr4 (1 HSPs)
chr4 (491-551)||(43061677-43061737)
[»] chr2 (2 HSPs)
chr2 (509-554)||(16698737-16698782)
chr2 (518-554)||(26610433-26610469)
[»] chr8 (1 HSPs)
chr8 (516-552)||(43534943-43534979)
[»] chr3 (1 HSPs)
chr3 (524-556)||(53791952-53791984)


Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 4 - 460
Target Start/End: Complemental strand, 18542727 - 18542281
Alignment:
Q  4 aatctttgagatggagcagtttctggtagaactcaacaaacacaagtctaagttgtttttcaacttttctcagctcttctttgttgaaacttaactcatt 103  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||    
T  18542727 aatctttgagatggaggagtttctgatagaactcaacaaacacaagtctaagttgtttttcaacttttttcagctcttctttattgaaacttaactgatt 18542628  T
Q  104 attatcattggaatcagtaaaaacatttttaactgttgatattggagattgaagagcatcatcaatctttacatgctcaagaatttccatagggtctctt 203  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||        
T  18542627 attatcattggaatctgtaaaaacatttttaactgttgatattggagattgaagagcatcatcaatctttacatgctcaaggatttccatagggtc---- 18542532  T
Q  204 gactctcttctgttataattactgtgtgcttcctcctcatgatgagtacttctattgatttgttgaaccgggtcaacttcagtgtccatcgtagagtctc 303  Q
         ||||||||| |||||||| ||||||||||| ||||||||||||||||||||  |||||||||| || ||||||||| |||||| ||||| ||||     
T  18542531 -----tcttctgttgtaattactatgtgcttcctcttcatgatgagtacttctattagtttgttgaacaggatcaacttcactgtccaccgtagggtctt 18542437  T
Q  304 tcttctgatgattttgatcgaagttatcatcaccagacaaacgaattggctgcaatcctgcatattcaacctcagactttaagacaataaaatttacttt 403  Q
    ||| | ||||||||||||  | |||||| ||||| |||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  18542436 tctgccgatgattttgatacatgttatcttcacctgacaaacgaatctgctgcaatcctgcatattcaacctcagac-ttaagacaataaaatttacttt 18542338  T
Q  404 ggcaactactagctatgaagcactgacacaaccatgagcaccggacacaactttgac 460  Q
    |||||||||| ||||||||  ||||| |||| |||||||||||||||||||||||||    
T  18542337 ggcaactacttgctatgaaaaactgatacaaacatgagcaccggacacaactttgac 18542281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 505 - 564
Target Start/End: Complemental strand, 18541683 - 18541624
Alignment:
Q  505 tataatttttcgaaaataaaataattgaatgtaactacatgtgtcggtgtcatgaatgta 564  Q
    |||| ||||||| ||||||||||||||||| ||||||| |||||||||||||| ||||||    
T  18541683 tatattttttcgtaaataaaataattgaatataactacgtgtgtcggtgtcataaatgta 18541624  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 509 - 554
Target Start/End: Original strand, 28452596 - 28452641
Alignment:
Q  509 atttttcgaaaataaaataattgaatgtaactacatgtgtcggtgt 554  Q
    |||||| ||||||||||||||||||||| || |||||||| |||||    
T  28452596 atttttagaaaataaaataattgaatgttaccacatgtgttggtgt 28452641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 516 - 550
Target Start/End: Complemental strand, 32722268 - 32722234
Alignment:
Q  516 gaaaataaaataattgaatgtaactacatgtgtcg 550  Q
    |||||||||||||||||||||||||||||||||||    
T  32722268 gaaaataaaataattgaatgtaactacatgtgtcg 32722234  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 516 - 558
Target Start/End: Original strand, 32908382 - 32908424
Alignment:
Q  516 gaaaataaaataattgaatgtaactacatgtgtcggtgtcatg 558  Q
    ||||||| |||||||||||||||| || |||||||||||||||    
T  32908382 gaaaatagaataattgaatgtaaccacgtgtgtcggtgtcatg 32908424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 526 - 558
Target Start/End: Original strand, 27832653 - 27832685
Alignment:
Q  526 taattgaatgtaactacatgtgtcggtgtcatg 558  Q
    ||||||||||||||||||||| |||||||||||    
T  27832653 taattgaatgtaactacatgtatcggtgtcatg 27832685  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 491 - 551
Target Start/End: Complemental strand, 43061737 - 43061677
Alignment:
Q  491 acatcgacactagttataatttttcgaaaata-aaataattgaatgtaactacatgtgtcgg 551  Q
    |||||||||||||| |||||||   ||||||| ||||||||||||||||| |||||||||||    
T  43061737 acatcgacactagtaataatttga-gaaaatataaataattgaatgtaacaacatgtgtcgg 43061677  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 509 - 554
Target Start/End: Complemental strand, 16698782 - 16698737
Alignment:
Q  509 atttttcgaaaataaaataattgaatgtaactacatgtgtcggtgt 554  Q
    |||||| ||||||  ||||||||||||||||| |||||||||||||    
T  16698782 atttttagaaaatctaataattgaatgtaactgcatgtgtcggtgt 16698737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 518 - 554
Target Start/End: Complemental strand, 26610469 - 26610433
Alignment:
Q  518 aaataaaataattgaatgtaactacatgtgtcggtgt 554  Q
    ||||||||||||||| ||||||||||||||| |||||    
T  26610469 aaataaaataattgagtgtaactacatgtgttggtgt 26610433  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 516 - 552
Target Start/End: Original strand, 43534943 - 43534979
Alignment:
Q  516 gaaaataaaataattgaatgtaactacatgtgtcggt 552  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  43534943 gaaaatgaaatatttgaatgtaactacatgtgtcggt 43534979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 524 - 556
Target Start/End: Complemental strand, 53791984 - 53791952
Alignment:
Q  524 aataattgaatgtaactacatgtgtcggtgtca 556  Q
    |||||||||||||||| ||||||||||||||||    
T  53791984 aataattgaatgtaaccacatgtgtcggtgtca 53791952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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