View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7336_low_4 (Length: 487)
Name: NF7336_low_4
Description: NF7336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7336_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 16 - 474
Target Start/End: Original strand, 32894700 - 32895162
Alignment:
| Q |
16 |
tcacatatatagtcgtactcatgtctacg----tttcttgttcaacattagatgaaaatactcatctttattattatgagacacatttaaaaaagaatgt |
111 |
Q |
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|||||||||||||| ||||||||| || | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
32894700 |
tcacatatatagtcatactcatgtttaagttaatttcttgttcaacattagatgaaaatactcatcgttattattatgagacacatttaaaaaagaatgt |
32894799 |
T |
|
| Q |
112 |
attgtttaattaattatttcagttgcttcaagaatttcctatatatatgtgactcggtatgttctaattattattggtcgtgatgtcaaacattttttaa |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
32894800 |
attgtttaattaattatttcagttgcttcaagaatttcctatatatatgtgactcggcatgttctaattattattggtcgtgatgtcaaacattttttaa |
32894899 |
T |
|
| Q |
212 |
tgtaagtattcataaatcatcataaacatatgcgaaaaacacaata-tttttattaaaaaattgtataccataaacttaaaaagtttacgttatatcttg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
32894900 |
tgtaagtattcataaatcatcataaacatatgcgaaaaacacaatattttttattaaaaaattgtataccataaactt-aaaagtttacgttatatcttg |
32894998 |
T |
|
| Q |
311 |
ataacataaaggtgaggtgtggatgnnnnnnntagagaagaatatttttatccgaataggaaataatgtggaggtgtggtacagatgtaagggcatggat |
410 |
Q |
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||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
32894999 |
ataacataaaggtgaggtgtggaagaaaaaaatagagaagaatatttttatccgaataggaaataatgtggaggtgtggtacagatgtaaggacatggat |
32895098 |
T |
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| Q |
411 |
aatattatcttcccttcatttttctttaaaataaccattcttggctattaccaacccgtgagta |
474 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32895099 |
aatattatcttcccttcatttttctttaaaataaccattcttggctattaccaacccgtgagta |
32895162 |
T |
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