View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7336_low_5 (Length: 478)
Name: NF7336_low_5
Description: NF7336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7336_low_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 17 - 468
Target Start/End: Complemental strand, 9050627 - 9050175
Alignment:
| Q |
17 |
actataaagttctattcctttgcttttctaaccaaaaagtacttttgtttccaaacatttttgtttcttaaagcatagaaaagaaaagtacacaaagttt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
9050627 |
actataaagttctattcctttgcttttctaaccaaaaagtacttttgtttccaaacatttttgtttctaaaagcatggaaaagaaaagtacacaaagttt |
9050528 |
T |
|
| Q |
117 |
gattatagttatgttggtctaatcaaatcaaagtaacatataacttactagtgatttcctatctgaaatgtcttgaagataccgcgaatcccaaacacta |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9050527 |
gattatagttatgttggtctaatcaaatcaaagcaacatataacttactagtgatttcctatctgaaatgtcttgaagataccgcgaatcccaaacacta |
9050428 |
T |
|
| Q |
217 |
gcagtatcactgaaggttgattttctacttccttcatgtgaagtagaccttatcctttggtcaagaactcttgcttgtactctaacaagagcttgcatgc |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9050427 |
gcagtatcactgaaggttgattttctacttccttcatgtgaagtagaccttatcctttggtcaagaactcttgcttgtactctaacaagagcttgcatgc |
9050328 |
T |
|
| Q |
317 |
acctaagtgtcatctttgcttgcttccgaacattgtgacctctcactaaagcttgcaacttcactaaccccttaagcgcacgaagtgctcttcttgcctt |
416 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
9050327 |
acctaagtgtcatctttgcttgcttcctaacattgtgacctctcactaaagcttgcaacttcactaaccccttaagcgcacggagtgctcttcttgcctt |
9050228 |
T |
|
| Q |
417 |
caaggtttacacacacacatcaagagagaa-aaaaggtacttttcaatttcat |
468 |
Q |
| |
|
||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
9050227 |
caaagtttacacacacacatcaagagagaaaaaaaggtacttttcaatttcat |
9050175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University