View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7336_low_7 (Length: 459)
Name: NF7336_low_7
Description: NF7336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7336_low_7 |
 | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 20 - 319
Target Start/End: Original strand, 42234871 - 42235170
Alignment:
| Q |
20 |
cggtagtgtctatcgaatacatcattttgcgaatcccttcaagcacgttttcccaattggcaggactctcatctacataaataaacaacaagctccctaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
42234871 |
cggtagtgtctatcgaatacatcattttgcgaatcccttcaagcacgttttcccaattggcaggactctcatctacataaataaacaataagctccctaa |
42234970 |
T |
|
| Q |
120 |
acttaaaacacttccatagaatagaatcaacccaaaactgtacatttgatgcaataagcacttactagtttgacccaatccatttgttcctgtgtatgca |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42234971 |
acttaaaacacttccatagaatagaatcaacccaaaactgtacatttgttgcaataagcacttactagtttgacccaatccatttgttcctgtgtatgca |
42235070 |
T |
|
| Q |
220 |
gatccttcaatctcagtcaaaccaaacttctgtgtagtaaaattactaacataaattatattgcaatacatggaaatgtgaacatttgaagaattcccaa |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42235071 |
gatccttcaatctcagtcaaaccaaacttctgtgtagtaaaattactaacataaattatattgcaatacatggaaatgtgaacatttgaagaattcccaa |
42235170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 365 - 449
Target Start/End: Original strand, 42235216 - 42235300
Alignment:
| Q |
365 |
gtctcactttttggtcttgaatttgcagcaagtgcttctttggttgaagttgtgtagtgtttttgcgtgtgttaaattggaacac |
449 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42235216 |
gtctcactttttggtcttgaatttgcagcaagtgcttctttggttgaagttgtgtagtgtttttgcgtgtgttaaattggaacac |
42235300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 273 - 319
Target Start/End: Original strand, 42260869 - 42260915
Alignment:
| Q |
273 |
aattatattgcaatacatggaaatgtgaacatttgaagaattcccaa |
319 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
42260869 |
aattatattgcattacatggaaatgtgaacatttgaagaattcccaa |
42260915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 273 - 319
Target Start/End: Original strand, 489704 - 489750
Alignment:
| Q |
273 |
aattatattgcaatacatggaaatgtgaacatttgaagaattcccaa |
319 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
489704 |
aattatattgcattacatggaaatgtgaacatttgaagaattcccaa |
489750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University