View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7336_low_9 (Length: 344)
Name: NF7336_low_9
Description: NF7336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7336_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 109649 - 109974
Alignment:
| Q |
1 |
attattacctgtgtccatgtatcagtgtagtgttcagtgttcttgtttgtgcttcatactaagaatttcaaaaattataattataatccaagttcaatta |
100 |
Q |
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| T |
109649 |
attattacctgtgtccatgtgtcagtgtaatgttcagtgttcttgtttgtgcttcatactaagaatttcaaaaattataattataatccaagttcaatta |
109748 |
T |
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| Q |
101 |
ccaatctaactgatacgtggaaggagacttcgacatattcgaaatcgcgctgcggcgactttgaagcaacgcaaacggagcaacagatccatacgcaatt |
200 |
Q |
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| T |
109749 |
ccaatctaactgatacgtggaaggagacttcgacatatttgaaatcgcgctgcggcgactttgaagcaacgcaaacggagcaacagatccatacgcaatt |
109848 |
T |
|
| Q |
201 |
cttcgccaatcagcatcatcaatctccggatctccacctccgagcttaacttcgataactttagcgccatctccggcgtcggaggtttgagaaggttcgg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||| || || |||||||| |||||||||||||||||||||| |
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| T |
109849 |
cttcgccaatcagcatcatcaatctccggatctccaccaccgagcttaacttcaatgactttggcaccgtctccggcatcggaggtttgagaaggttcgg |
109948 |
T |
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| Q |
301 |
cgaaaagggagacgcggagggagttg |
326 |
Q |
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|||| |||||||| |||||||||||| |
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| T |
109949 |
cgaagagggagacacggagggagttg |
109974 |
T |
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