View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7337_high_1 (Length: 1029)
Name: NF7337_high_1
Description: NF7337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7337_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 981; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 981; E-Value: 0
Query Start/End: Original strand, 1 - 1017
Target Start/End: Complemental strand, 42127781 - 42126765
Alignment:
| Q |
1 |
gtccaggatgttgtgctgtcattggtgtccctgaagaaactttatcagcaaaagggatttccttgccagatggttctgatcaggttggtttggttgtgat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42127781 |
gtccaggatgttgtgctgtcattggtgtccctgaagaaactttatcagcaaaagggatttccttgccagatggttctgatcaggttggtttggttgtgat |
42127682 |
T |
|
| Q |
101 |
tgcagaactgagggatggtaaaccagttagcaaagatgtggttgacgatattcagactcgcgtggcggaagaacatggagtcaatgttgcttctgtcaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42127681 |
tgcagaactgagggatggtaaaccagttagcaaagatgtggttgacgatattcagactcgcgtggcggaagaacatggagtcaatgttgcttctgtcaag |
42127582 |
T |
|
| Q |
201 |
ttgatcaagcctagaaccatcagcaaaacaacgtcaggaaaaattagaaggtttgaatgtctcaaacagtttgcagatggaacactgaatttggtgccac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42127581 |
ttgatcaagcctagaaccatcagcaaaacaacgtcaggaaaaattagaaggtttgaatgtctcaaacagtttgcagatggaacactgaatttggtgccac |
42127482 |
T |
|
| Q |
301 |
agcctgttttgacaaagaaaaaactggtaaggtcgttcactacaggaacatgtaaagaaggaagaacaccccgagcacagctagcgaatagcacacctat |
400 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42127481 |
aacctgttttgacaaagaaaaaactggtaaggtcgttcactacaggaacatgtaaagaaggaagaacaccccgagcacagctagcgaatagcacacctat |
42127382 |
T |
|
| Q |
401 |
aactagtccaagaattggtaacaaggaaattatggaattcttaaaaaggcttatttctgagcaggctggaatcccggtaagcaaaatctctgttacagac |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42127381 |
aactagtccaagaattggtaacaaggaaattatggaattcttgaaaaggcttatttctgagcaggctggaatcccggtaagcaaaatctctgttacagac |
42127282 |
T |
|
| Q |
501 |
aacatgtcaacctatggaatggattcaatcagcgtggttaaagcaactcaaaaactctcagatttccttggagttacagttgcagctatagatgttttca |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42127281 |
aacatgtcaacctatggaatggattcaatcagcgtggttaaagcaactcaaaaactctcagatttccttggagttacagttgcagctatagatgttttca |
42127182 |
T |
|
| Q |
601 |
gtgcatcctgcattcaagaattggtcaacttctcagagaaccttctgctgaagtcacaacctcaccttttgagcaatccatcctatgctccagaagctga |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42127181 |
gtgcatcctgcattcaagaattggtcaacttctcagagaaccttctgctgaagtcacaacctcaccttttgagcaatccatcctatgctccagaagctga |
42127082 |
T |
|
| Q |
701 |
aactgagtctactgaatttattgtggatgtgtccaagtcacaccagtggagtatacatttacttcaactcttggcacttgttttcatttctatcctgttg |
800 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
42127081 |
aactgagtctactgaatttattgtggatgtgtccaagtctcaccagtggagtatacatttacttcaactcttggcacttgttttcatttctatccttgtg |
42126982 |
T |
|
| Q |
801 |
gtttctcctgcttatctttccatcactactttccaaatactcatcgcaagtttcggtaaatcagcatatagaattcctttgtcaaactatatattttcac |
900 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
42126981 |
gtttctcctgcttatctttccatcactactttccaaatattcatcgcaagtttcggtaaatcagcatatggaattcctttgtcaaactatatattttcac |
42126882 |
T |
|
| Q |
901 |
ttgccttggcaccactttcttggatcctttgcattgcttctacatgcatttgcatttcattttttggaaattctttcttgaggccaaactatgctcttac |
1000 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
42126881 |
ttgccttggcaccactttcttggatcctttgcattgcttctacatgcatttgcatttcattttttggaaattctttcttgaggccaaactacgctcttac |
42126782 |
T |
|
| Q |
1001 |
tcctgagatgtccatct |
1017 |
Q |
| |
|
|||||| |||||||||| |
|
|
| T |
42126781 |
tcctgaaatgtccatct |
42126765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 105; Significance: 6e-52; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 12 - 268
Target Start/End: Complemental strand, 24931359 - 24931103
Alignment:
| Q |
12 |
tgtgctgtcattggtgtccctgaagaaactttatcagcaaaagggatttccttgccagatggttctgatcaggttggtttggttgtgattgcagaactga |
111 |
Q |
| |
|
||||||||||||||||||||||| |||| | |||||||||| || ||||| | || ||||| ||||||||||||| |||||||||||||||||| | | |
|
|
| T |
24931359 |
tgtgctgtcattggtgtccctgaggaaattctatcagcaaagggaatttctattcctgatggctctgatcaggttgccttggttgtgattgcagaagtaa |
24931260 |
T |
|
| Q |
112 |
gggatggtaaaccagttagcaaagatgtggttgacgatattcagactcgcgtggcggaagaacatggagtcaatgttgcttctgtcaagttgatcaagcc |
211 |
Q |
| |
|
|||| ||||||| ||||||||||||||| |||| |||| ||| || ||||| |||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
24931259 |
gggacggtaaacaggttagcaaagatgtgattgagattattaagatgcgtgtggcagaagaacatggagttgttcttgcttctgtcaagttgatcaagcc |
24931160 |
T |
|
| Q |
212 |
tagaaccatcagcaaaacaacgtcaggaaaaattagaaggtttgaatgtctcaaaca |
268 |
Q |
| |
|
||||||||||||||||||||| || ||||| || | || ||||||||| ||||||| |
|
|
| T |
24931159 |
tagaaccatcagcaaaacaacatctggaaagatcaagagatttgaatgtatcaaaca |
24931103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 449 - 624
Target Start/End: Complemental strand, 24930913 - 24930738
Alignment:
| Q |
449 |
gcttatttctgagcaggctggaatcccggtaagcaaaatctctgttacagacaacatgtcaacctatggaatggattcaatcagcgtggttaaagcaact |
548 |
Q |
| |
|
|||||||||||||||| |||||| || | | ||||||||| || || |||||| || || |||||||||| || ||||| | ||||||||||||||| |
|
|
| T |
24930913 |
gcttatttctgagcagactggaacgccaatcaacaaaatctcagtcactgacaacctgacatcctatggaatcgactcaattggtgtggttaaagcaact |
24930814 |
T |
|
| Q |
549 |
caaaaactctcagatttccttggagttacagttgcagctatagatgttttcagtgcatcctgcattcaagaattgg |
624 |
Q |
| |
|
||||| || ||||||||||| || |||||||||| ||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
24930813 |
caaaagctatcagatttcctaggtacaccagttgcagcaatagatgttttcactgcatcatgcattcaagaattgg |
24930738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 511 - 620
Target Start/End: Complemental strand, 24930566 - 24930457
Alignment:
| Q |
511 |
cctatggaatggattcaatcagcgtggttaaagcaactcaaaaactctcagatttccttggagttacagttgcagctatagatgttttcagtgcatcctg |
610 |
Q |
| |
|
|||||||||| || ||||| | |||||||||||||||||||||||||| ||||| ||||| |||||||||| ||||||||||||| |||||| || |
|
|
| T |
24930566 |
cctatggaattgactcaattggtgtggttaaagcaactcaaaaactctcggattttcttgggacaccagttgcagcaatagatgttttcactgcatcatg |
24930467 |
T |
|
| Q |
611 |
cattcaagaa |
620 |
Q |
| |
|
|||||||||| |
|
|
| T |
24930466 |
cattcaagaa |
24930457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 909 - 976
Target Start/End: Complemental strand, 24930168 - 24930101
Alignment:
| Q |
909 |
gcaccactttcttggatcctttgcattgcttctacatgcatttgcatttcattttttggaaattcttt |
976 |
Q |
| |
|
||||| ||| ||||||| |||||||| ||||| || ||| ||||||||||||| ||||||| |||||| |
|
|
| T |
24930168 |
gcacctcttgcttggattctttgcatcgcttccacttgcgtttgcatttcattgtttggaagttcttt |
24930101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University