View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7337_high_105 (Length: 213)
Name: NF7337_high_105
Description: NF7337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7337_high_105 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 16 - 198
Target Start/End: Original strand, 32091623 - 32091812
Alignment:
| Q |
16 |
cacaggttaaccatttcatttcagtaaacaaaaattcaaatccatgagatagggcacatga-------tgatccaacaccgtaattctataaataattat |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
32091623 |
cacaggttaaccatttcatttcagtaaacaaaaattcaaatccatgagatagggcacatgccacatggtgatccaacaccgtaattctataaataattat |
32091722 |
T |
|
| Q |
109 |
gctagcaacacactcatcttctataattatattagctctttaacaaatacaggcttgatacattgaccaagatacgaccgactaccacca |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32091723 |
gctagcaacacactcatcttctataattatattagctctttaacaaatacaggcttgatacattgaccaagatacgaccgactaccacca |
32091812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 103
Target Start/End: Original strand, 32095749 - 32095836
Alignment:
| Q |
16 |
cacaggttaaccatttcatttcagtaaacaaaaattcaaatccatgagatagggcacatgatgatccaacaccgtaattctataaata |
103 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
32095749 |
cacaagttaaccatttcatttcagtaaacaaaaattcaaatccatgagatggggcacatggtgatccaacaccgtaattctataaata |
32095836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 32095826 - 32095897
Alignment:
| Q |
127 |
ttctataattatattagctctttaacaaatacaggcttgatacattgaccaagatacgaccgactaccacca |
198 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
32095826 |
ttctataaatatattagctctttaactaatacaggcttgatacaatgaccaagatacgaccgactaccacca |
32095897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 21 - 170
Target Start/End: Complemental strand, 41746796 - 41746645
Alignment:
| Q |
21 |
gttaaccatttcatttcagtaaacaaaaattcaaatccatgagatagggcacatgatgatccaacaccgtaattctataaataattatgctagcaacaca |
120 |
Q |
| |
|
||||| ||||||||||||||| |||||| ||||||| | ||| || | ||||||| |||||| |||| |||||||||| || |||||| | || |||||| |
|
|
| T |
41746796 |
gttaaacatttcatttcagtatacaaaagttcaaatacgtgaaatggagcacatggtgatccgacactgtaattctattaaaaattatacaagaaacaca |
41746697 |
T |
|
| Q |
121 |
ctcatcttctataa--ttatattagctctttaacaaatacaggcttgataca |
170 |
Q |
| |
|
||| |||||||||| |||||||||| |||||| |||||| ||| |||||| |
|
|
| T |
41746696 |
ctcctcttctataaatatatattagctatttaactaatacaagctggataca |
41746645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University