View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7337_high_108 (Length: 203)
Name: NF7337_high_108
Description: NF7337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7337_high_108 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 4145344 - 4145528
Alignment:
| Q |
19 |
ggaacagctgaatctgaagggtgtgtgaaactatcccagattgttgctccagaattgatgtctcttagaatcaagttccctgcatcatcaagtttagctg |
118 |
Q |
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| T |
4145344 |
ggaacagctgaatctgaagggtgtgtgaaactatcccagattgttgctccagaattgatgtctcttagaatcaagttccctgcatcatcaagtttagctg |
4145443 |
T |
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| Q |
119 |
ttgaatttgttgaagatgaaatgtttgttgaccaaatgatgctgccatttggtttgttcaaaattacaagatttccatttttgtg |
203 |
Q |
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| T |
4145444 |
ttgaatttgttgaagatgaaatgtttgttgaccaaatgatgctgccatttggtttgttcaaaattacaagatttccatttttgtg |
4145528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 4134542 - 4134726
Alignment:
| Q |
19 |
ggaacagctgaatctgaagggtgtgtgaaactatcccagattgttgctccagaattgatgtctcttagaatcaagttccctgcatcatcaagtttagctg |
118 |
Q |
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| T |
4134542 |
ggaacagctgaatctgcagggtgtgtgaaactatcccagattgttgctccagaattgatgtctcttagaatcaagttccctgcatcatcaagtttagctg |
4134641 |
T |
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| Q |
119 |
ttgaatttgttgaagatgaaatgtttgttgaccaaatgatgctgccatttggtttgttcaaaattacaagatttccatttttgtg |
203 |
Q |
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| T |
4134642 |
ttgaatttgttgaagatgaaatgtttgttgaccaaatgatgataccatttggtttgttcaatattacaagatttccatctttgtg |
4134726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 4123997 - 4124181
Alignment:
| Q |
19 |
ggaacagctgaatctgaagggtgtgtgaaactatcccagattgttgctccagaattgatgtctcttagaatcaagttccctgcatcatcaagtttagctg |
118 |
Q |
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|||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||| ||||| | ||||||||| |||| |||| |||||| ||||| |
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| T |
4123997 |
ggaacagctgcatctgcagggtgtgtgaaactatcccagattgttgctccagaactgatatctctcaaaatcaagtttcctgaatcagcaagttgagctg |
4124096 |
T |
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| Q |
119 |
ttgaatttgttgaagatgaaatgtttgttgaccaaatgatgctgccatttggtttgttcaaaattacaagatttccatttttgtg |
203 |
Q |
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| T |
4124097 |
ttgaatttgttgaagatgaaatgtttgttgaccatataataacaccatttggtttgttcaatattacaagatttccatttttgtg |
4124181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 4153347 - 4153531
Alignment:
| Q |
19 |
ggaacagctgaatctgaagggtgtgtgaaactatcccagattgttgctccagaattgatgtctcttagaatcaagttccctgcatcatcaagtttagctg |
118 |
Q |
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|||||||||| ||||| ||||||||||||||||||||||||||||||||| ||| |||| ||||| | ||||||||| |||| |||| |||||| ||||| |
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| T |
4153347 |
ggaacagctgcatctgcagggtgtgtgaaactatcccagattgttgctccggaactgatatctctcaaaatcaagtttcctgaatcagcaagttgagctg |
4153446 |
T |
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| Q |
119 |
ttgaatttgttgaagatgaaatgtttgttgaccaaatgatgctgccatttggtttgttcaaaattacaagatttccatttttgtg |
203 |
Q |
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|||||||||||||||||||||||||||||||||| || || ||||||||||||||||| |||| || |||||||| |||||| |
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| T |
4153447 |
ttgaatttgttgaagatgaaatgtttgttgaccatataataacaccatttggtttgttcaatattataaaatttccatctttgtg |
4153531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 4163700 - 4163890
Alignment:
| Q |
19 |
ggaacagctgaatctgaagggtgtgtgaaactatcccagattgttgctccagaattgatgtctcttagaatcaagttccctgcatcatcaagtttagctg |
118 |
Q |
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|||||||| | ||| | |||||| |||||||||||||| ||||||| || |||||||||||| |||||||||||||| ||| ||||| |||||| ||||| |
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| T |
4163700 |
ggaacagcggcatccgcagggtgagtgaaactatcccaaattgttgatctagaattgatgtcacttagaatcaagtttcctacatcaacaagttgagctg |
4163799 |
T |
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| Q |
119 |
ttgaatttgttgaa----ga--tgaaatgtttgttgaccaaatgatgctgccatttggtttgttcaaaattacaagatttccatttttgtg |
203 |
Q |
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| T |
4163800 |
tggaatttattgaatttggacttgaaatgcttgttgaccaaatgatgctaccattttctttgttcaatattacaagatttccatttttgtg |
4163890 |
T |
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