View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7337_high_11 (Length: 605)
Name: NF7337_high_11
Description: NF7337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7337_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 544; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 11 - 591
Target Start/End: Complemental strand, 3879774 - 3879194
Alignment:
| Q |
11 |
agaatatatgagaatggggaatgaaacaagacataagtataagtgtataacacatacttgaagtgaatttgaagtgatattgatccggtgaagtacagag |
110 |
Q |
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| T |
3879774 |
agaatatatgagaatggggaatgaaacaagacataagtataagtgtataacacatacttgaagtgaatttgaagtgatattgatccggtgaagtacagag |
3879675 |
T |
|
| Q |
111 |
cagtcagacacttgtatagaagaaagcgatatagccctcaagttcaaatctgctaatctgcaaaggaaaccattcnnnnnnntaaattaggcgcaacaat |
210 |
Q |
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| T |
3879674 |
cagtcagacacttgtatagaagaaagcgatatagccctcaagttcaaatctgctaatctgcaaaggaaaccattcaaaaaaataaattaggcgcaacaat |
3879575 |
T |
|
| Q |
211 |
agaaaaaaggatttggtattgacttaaacagaaagtgaaaagcaatagagagagacggatcaataatagaattatagtgcttttctggggagagagaaaa |
310 |
Q |
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| T |
3879574 |
agaaaaaaggatttggtattgacttaaacagaaagtgaaaagcaatagagagagacggatcaataatagaattatagtgcttttctggggagagagaaaa |
3879475 |
T |
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| Q |
311 |
tgaagcagaaacatacttgcgacagtacgccaatctaatattcttcaaacgtggaagatccaacgacgcttaagtcaatagactgcaactgcggagttac |
410 |
Q |
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| T |
3879474 |
tgaagcagaaacatacttgcgacagtacgccaatctaatattcttcaaatgtggaagatccaacgacgctcaagtcaatagactgcaactgcggagttac |
3879375 |
T |
|
| Q |
411 |
aaaacctgcattggcggggtgataaaatgtattaatcgtaatactcatgaattcagacatgtcattaatatcaatatctgggacagataaaatacctcca |
510 |
Q |
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| T |
3879374 |
aaaacctgcattggcggggtggttaaatgtattaatcgtaatactcatgaattcagacatgtcattaatatcaatatctgggacagataaaatacctcca |
3879275 |
T |
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| Q |
511 |
acatagagctatgagctatagcagccattgatgcagaagtgatgccctcgcagctatgaagccttagaattgtcaacattg |
591 |
Q |
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| T |
3879274 |
acatagagctatgagctatagcagccattgatgcagaagtgatgccctcgcagctatgaagccttagaattgtcaacattg |
3879194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 290 - 591
Target Start/End: Complemental strand, 3865513 - 3865214
Alignment:
| Q |
290 |
cttttctggggagagagaaaatgaagcagaaacatacttgcgacagtacgccaatctaatattcttcaaacgtggaagatccaacgacgcttaagtcaat |
389 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| | |||||||| |
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| T |
3865513 |
cttttctggggagagagaaaatgaagcagaaacatacttgcgacagtacaccaatctaatattctgcaaacgtggaagatccaacgacaccgaagtcaat |
3865414 |
T |
|
| Q |
390 |
agactgcaactgcggagttacaaaacctgcattggcggggtgataaaatgtattaatcgtaatactcatgaattcagacatgtcattaatatcaatatct |
489 |
Q |
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| T |
3865413 |
agactgcaattgtcaagctccaaaacctgcattggc--agttatgtcatgtactcgtcctaatactcgggaattcagacaagtcgttaatatcaatatct |
3865316 |
T |
|
| Q |
490 |
gggacagataaaatacctccaacatagagctatgagctatagcagccattgatgcagaagtgatgccctcgcagctatgaagccttagaattgtcaacat |
589 |
Q |
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|| ||| |||| |||||||||||||||| || |||||||| ||||||||||| ||||||||||||||||| ||||||||||| |||||||| |||||||| |
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| T |
3865315 |
ggaacaaataacatacctccaacatagaactgtgagctattgcagccattgacgcagaagtgatgccctcacagctatgaagtcttagaatggtcaacat |
3865216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 62 - 185
Target Start/End: Complemental strand, 3865732 - 3865609
Alignment:
| Q |
62 |
acatacttgaagtgaatttgaagtgatattgatccggtgaagtacagagcagtcagacacttgtatagaagaaagcgatatagccctcaagttcaaatct |
161 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
3865732 |
acatacttgaagtgaatttgaagtgatattgatccggtggagtacagagcagttagacacttgtatagaagaaagcgatatagctctcaaattcaaatct |
3865633 |
T |
|
| Q |
162 |
gctaatctgcaaaggaaaccattc |
185 |
Q |
| |
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|||||||||| ||||||||||||| |
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| T |
3865632 |
gctaatctgccaaggaaaccattc |
3865609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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