View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7337_high_12 (Length: 598)
Name: NF7337_high_12
Description: NF7337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7337_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 91; Significance: 8e-44; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 17 - 123
Target Start/End: Original strand, 3002332 - 3002438
Alignment:
| Q |
17 |
gcagcaacacaacacctctcatcagctgactaaggctgagcacgccccaacgacaaccataaaaccaatactccgcagagcagaaccagacctactgaaa |
116 |
Q |
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| T |
3002332 |
gcagcaacacaacacctctcatcagctgactaaggctgagcacgccccgacgacaaccagaaaaccaataccccgcagagtagaaccagacctactgaaa |
3002431 |
T |
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| Q |
117 |
gtaccaa |
123 |
Q |
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||||||| |
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| T |
3002432 |
gtaccaa |
3002438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 396 - 582
Target Start/End: Complemental strand, 2928618 - 2928431
Alignment:
| Q |
396 |
caaacctcaaaggtacccgatcaactaactta----tactacgaaaaacgcaatagaacagctccaatacacaaatctaagaaactgaaaaactgccgaa |
491 |
Q |
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|||||||||||||||| |||||||| |||| | ||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||| ||| || |
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| T |
2928618 |
caaacctcaaaggtactcgatcaaccaactgactgatactaagaaaaacaaaatagaacaactccaatacacaaatctaagaaactgaaaaaccgcccaa |
2928519 |
T |
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| Q |
492 |
acagtacaccagagattgacagacta---gttgatacaaccctgcaatcagcaatcatactagaatcaccatggacctttagaattttctgagc |
582 |
Q |
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| T |
2928518 |
acagtacaccagagattgacagactagttgttgaaacagccc------ctgcaatcatacttgaatcaccatggaccttttgaattttctgagc |
2928431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 17 - 123
Target Start/End: Original strand, 3010718 - 3010824
Alignment:
| Q |
17 |
gcagcaacacaacacctctcatcagctgactaaggctgagcacgccccaacgacaaccataaaaccaatactccgcagagcagaaccagacctactgaaa |
116 |
Q |
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|||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||| | ||||||||| |||||||||||||||||||||||||||| |
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| T |
3010718 |
gcagcaacacaacacctctcatcagcggactaagactgagcacgccccaacgataaccagataaccaataccccgcagagcagaaccagacctactgaaa |
3010817 |
T |
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| Q |
117 |
gtaccaa |
123 |
Q |
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||||||| |
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| T |
3010818 |
gtaccaa |
3010824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 419 - 475
Target Start/End: Original strand, 3002717 - 3002773
Alignment:
| Q |
419 |
actaacttatactacgaaaaacgcaatagaacagctccaatacacaaatctaagaaa |
475 |
Q |
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||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||| |
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| T |
3002717 |
actaactgatactaagaaaaacgcaatagaacagctccaatacacaaatataagaaa |
3002773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 442 - 482
Target Start/End: Original strand, 37200252 - 37200292
Alignment:
| Q |
442 |
caatagaacagctccaatacacaaatctaagaaactgaaaa |
482 |
Q |
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||||||| |||| |||||||||||| ||||||||||||||| |
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| T |
37200252 |
caatagagcagccccaatacacaaaactaagaaactgaaaa |
37200292 |
T |
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