View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7337_high_14 (Length: 583)

Name: NF7337_high_14
Description: NF7337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7337_high_14
NF7337_high_14
[»] chr5 (24 HSPs)
chr5 (203-583)||(3299482-3299862)
chr5 (203-583)||(3392375-3392755)
chr5 (373-543)||(1163506-1163676)
chr5 (16-145)||(3299295-3299424)
chr5 (16-145)||(3392188-3392317)
chr5 (203-338)||(1849914-1850049)
chr5 (360-532)||(40418404-40418573)
chr5 (203-338)||(1163690-1163822)
chr5 (203-341)||(39879763-39879898)
chr5 (203-341)||(40418232-40418367)
chr5 (373-507)||(1850063-1850197)
chr5 (203-341)||(38987654-38987789)
chr5 (203-341)||(39726367-39726502)
chr5 (360-500)||(39879941-39880078)
chr5 (360-500)||(38987826-38987963)
chr5 (360-500)||(39726545-39726682)
chr5 (203-341)||(39168795-39168930)
chr5 (204-341)||(39399809-39399943)
chr5 (361-488)||(39168974-39169101)
chr5 (16-74)||(1163942-1164000)
chr5 (16-73)||(1849766-1849823)
chr5 (517-583)||(1850192-1850258)
chr5 (16-88)||(39168698-39168770)
chr5 (434-476)||(39400042-39400084)
[»] chr4 (5 HSPs)
chr4 (203-341)||(25912292-25912427)
chr4 (360-493)||(25912122-25912252)
chr4 (269-335)||(44444772-44444838)
chr4 (16-69)||(25912528-25912581)
chr4 (423-483)||(44444614-44444674)


Alignment Details
Target: chr5 (Bit Score: 369; Significance: 0; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 203 - 583
Target Start/End: Original strand, 3299482 - 3299862
Alignment:
Q  203 caaaaaatatcgtttagctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatcttggtcgtatt 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3299482 caaaaaatatcgtttagctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatcttggtcgtatt 3299581  T
Q  303 ttaaaacccggtgaccatgctcttggttatgacctgtcttctggaggagtagatacaaaccttcctgctgccattttgatcaccaagattagttatgccc 402  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||     
T  3299582 ttaaaacccggtgaccatgctcttggttatgacctgtcttctggaggagtagatacaaaccttcctgctgccattttgatcaccaaaattagttatgccg 3299681  T
Q  403 aagaggagaatggtagagttgttgctgttcaggataagtgggaatctggttatcaactcttcttaaaagatctacaacaagacactaaactcctcttcga 502  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3299682 aagaggagaatggtagagttgttgctgttcaggataagtgggaatctgattatcaactcttcttaaaagatctacaacaagacactaaactcctcttcga 3299781  T
Q  503 ccgaagagcaatctaccgaaatcgaaccaactgccatccatttgacacaaccatcaaatccccctttagaagaccttttta 583  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3299782 ccgaagagcaatctaccgaaatcgaaccaactgccatccatttgacacaaccatcaaatccccctttagaagaccttttta 3299862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 203 - 583
Target Start/End: Original strand, 3392375 - 3392755
Alignment:
Q  203 caaaaaatatcgtttagctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatcttggtcgtatt 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3392375 caaaaaatatcgtttagctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatcttggtcgtatt 3392474  T
Q  303 ttaaaacccggtgaccatgctcttggttatgacctgtcttctggaggagtagatacaaaccttcctgctgccattttgatcaccaagattagttatgccc 402  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||     
T  3392475 ttaaaacccggtgaccatgctcttggttatgacctgtcttctggaggagtagatacaaaccttcctgctgccattttgatcaccaaaattagttatgccg 3392574  T
Q  403 aagaggagaatggtagagttgttgctgttcaggataagtgggaatctggttatcaactcttcttaaaagatctacaacaagacactaaactcctcttcga 502  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3392575 aagaggagaatggtagagttgttgctgttcaggataagtgggaatctgattatcaactcttcttaaaagatctacaacaagacactaaactcctcttcga 3392674  T
Q  503 ccgaagagcaatctaccgaaatcgaaccaactgccatccatttgacacaaccatcaaatccccctttagaagaccttttta 583  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3392675 ccgaagagcaatctaccgaaatcgaaccaactgccatccatttgacacaaccatcaaatccccctttagaagaccttttta 3392755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 373 - 543
Target Start/End: Complemental strand, 1163676 - 1163506
Alignment:
Q  373 ccattttgatcaccaagattagttatgcccaagaggagaatggtagagttgttgctgttcaggataagtgggaatctggttatcaactcttcttaaaaga 472  Q
    |||||||||| ||||||||||||| |||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  1163676 ccattttgattaccaagattagttttgctaaagaggagaatggtagagttgttcctgttcaggataagtgggaatctggttatcaactcttcttaaaaga 1163577  T
Q  473 tctacaacaagacactaaactcctcttcgaccgaagagcaatctaccgaaatcgaaccaactgccatccat 543  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||    
T  1163576 tctacaacaagaccctaaactcctcttcgaccaaagagcaatctaccgaaatccaacctactgccatccat 1163506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 16 - 145
Target Start/End: Original strand, 3299295 - 3299424
Alignment:
Q  16 cacccttcactccttcattctctaggcctcagttagtggaatatgttgttcttggtattaacctcaaggaggaattagaggagttggtggaggagaataa 115  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3299295 cacccttcacgccttcattctctaggcctcagttagtggaatatgttgttctcggtattaacctcaaggaggaattagaggagttggtggaggagaataa 3299394  T
Q  116 agagaagaagaagctgattattgagttgta 145  Q
    ||||||||||||||||||||||||||||||    
T  3299395 agagaagaagaagctgattattgagttgta 3299424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 16 - 145
Target Start/End: Original strand, 3392188 - 3392317
Alignment:
Q  16 cacccttcactccttcattctctaggcctcagttagtggaatatgttgttcttggtattaacctcaaggaggaattagaggagttggtggaggagaataa 115  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3392188 cacccttcacgccttcattctctaggcctcagttagtggaatatgttgttctcggtattaacctcaaggaggaattagaggagttggtggaggagaataa 3392287  T
Q  116 agagaagaagaagctgattattgagttgta 145  Q
    ||||||||||||||||||||||||||||||    
T  3392288 agagaagaagaagctgattattgagttgta 3392317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 203 - 338
Target Start/End: Original strand, 1849914 - 1850049
Alignment:
Q  203 caaaaaatatcgtttagctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatcttggtcgtatt 302  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  1849914 caaaaaatatcgtttagctaatgccatagttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaggactcatcttagtcgtatt 1850013  T
Q  303 ttaaaacccggtgaccatgctcttggttatgacctg 338  Q
    |||||||| |||||||||||||||||||||||||||    
T  1850014 ttaaaacctggtgaccatgctcttggttatgacctg 1850049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 360 - 532
Target Start/End: Original strand, 40418404 - 40418573
Alignment:
Q  360 aaccttcctgctgccattttgatcaccaagattagttatgcccaagaggagaatggtagagttgttgctgttcaggataagtgggaatctggttatcaac 459  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||   |||||||||||||||||| |||| |||||||||||||||| ||||||||    
T  40418404 aaccttcctgctgccattttgatcaccaagattagttatgccgaagag---aatggtagagttgttgctcttcatgataagtgggaatctgattatcaac 40418500  T
Q  460 tcttcttaaaagatctacaacaagacactaaactcctcttcgaccgaagagcaatctaccgaaatcgaaccaa 532  Q
    ||||||| || |||||||||||||||||||||||||||||| ||  |||||||  ||||||| ||| ||||||    
T  40418501 tcttcttcaatgatctacaacaagacactaaactcctcttcaacgtaagagcagcctaccgagatcaaaccaa 40418573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 203 - 338
Target Start/End: Complemental strand, 1163822 - 1163690
Alignment:
Q  203 caaaaaatatcgtttagctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatcttggtcgtatt 302  Q
    ||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||   ||||||||||| |||||||||||||||||||    
T  1163822 caaaaaatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataataatcacac---ttttcaaatcaggactcatcttggtcgtatt 1163726  T
Q  303 ttaaaacccggtgaccatgctcttggttatgacctg 338  Q
    ||||||||||||||||||||||||||||||||||||    
T  1163725 ttaaaacccggtgaccatgctcttggttatgacctg 1163690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 203 - 341
Target Start/End: Original strand, 39879763 - 39879898
Alignment:
Q  203 caaaaaatatcgtttagctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatcttggtcgtatt 302  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||| |   ||||||||||||||||| |||||||||||||||||||    
T  39879763 caaaaaatatcgtttagctgatgctgtggttgctcgtgtgaaagatactggaaataatga---cacaacttttcaaatcaggactcatcttggtcgtatt 39879859  T
Q  303 ttaaaacccggtgaccatgctcttggttatgacctgtct 341  Q
    |||||||||||||||||||||||||||||||||||||||    
T  39879860 ttaaaacccggtgaccatgctcttggttatgacctgtct 39879898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 203 - 341
Target Start/End: Original strand, 40418232 - 40418367
Alignment:
Q  203 caaaaaatatcgtttagctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatcttggtcgtatt 302  Q
    |||||||||| |||||||||||||  |||||||||||||||||||||||||||||||| |   ||||||||||||||||| |||||||||||||||||||    
T  40418232 caaaaaatattgtttagctgatgctgtggttgctcgtgtgaaagatattggaaataatga---cacaacttttcaaatcaggactcatcttggtcgtatt 40418328  T
Q  303 ttaaaacccggtgaccatgctcttggttatgacctgtct 341  Q
    |||||||||||||||||||||||||||||||||||||||    
T  40418329 ttaaaacccggtgaccatgctcttggttatgacctgtct 40418367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 373 - 507
Target Start/End: Original strand, 1850063 - 1850197
Alignment:
Q  373 ccattttgatcaccaagattagttatgcccaagaggagaatggtagagttgttgctgttcaggataagtgggaatctggttatcaactcttcttaaaaga 472  Q
    |||||||||| ||||||||||||| |||  |||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||    
T  1850063 ccattttgattaccaagattagttttgctaaagaggagaatggtagagttattcctgttcaggataagtgggaatctgattatcaactcttcttaaaaga 1850162  T
Q  473 tctacaacaagacactaaactcctcttcgaccgaa 507  Q
    | ||||||||||| |||||||||||||||||||||    
T  1850163 tttacaacaagaccctaaactcctcttcgaccgaa 1850197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 203 - 341
Target Start/End: Original strand, 38987654 - 38987789
Alignment:
Q  203 caaaaaatatcgtttagctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatcttggtcgtatt 302  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||| |   ||||||||||||||||| ||||||||| ||||||||     
T  38987654 caaaaaatatcgtttagctgatgctgtggttgctcgtgtgaaagatactggaaataatga---cacaacttttcaaatcaggactcatctcggtcgtatc 38987750  T
Q  303 ttaaaacccggtgaccatgctcttggttatgacctgtct 341  Q
    |||||||||||||||||||||||||||||||||||||||    
T  38987751 ttaaaacccggtgaccatgctcttggttatgacctgtct 38987789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 203 - 341
Target Start/End: Original strand, 39726367 - 39726502
Alignment:
Q  203 caaaaaatatcgtttagctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatcttggtcgtatt 302  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||| |   ||||||||||||||||| ||||||||| ||||||||     
T  39726367 caaaaaatatcgtttagctgatgctgtggttgctcgtgtgaaagatactggaaataatga---cacaacttttcaaatcaggactcatctcggtcgtatc 39726463  T
Q  303 ttaaaacccggtgaccatgctcttggttatgacctgtct 341  Q
    |||||||||||||||||||||||||||||||||||||||    
T  39726464 ttaaaacccggtgaccatgctcttggttatgacctgtct 39726502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 360 - 500
Target Start/End: Original strand, 39879941 - 39880078
Alignment:
Q  360 aaccttcctgctgccattttgatcaccaagattagttatgcccaagaggagaatggtagagttgttgctgttcaggataagtgggaatctggttatcaac 459  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||| |   ||||||||||||||||||||  |||||||||||||||||| ||||||||    
T  39879941 aaccttcctgctgccattttgatcagcaagattagttatgccgaagtg---aatggtagagttgttgctgtcaaggataagtgggaatctgattatcaac 39880037  T
Q  460 tcttcttaaaagatctacaacaagacactaaactcctcttc 500  Q
    ||||||| || |||||||||||| ||||||||||| |||||    
T  39880038 tcttcttcaatgatctacaacaaaacactaaactcatcttc 39880078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 360 - 500
Target Start/End: Original strand, 38987826 - 38987963
Alignment:
Q  360 aaccttcctgctgccattttgatcaccaagattagttatgcccaagaggagaatggtagagttgttgctgttcaggataagtgggaatctggttatcaac 459  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||| |   ||||||||||||||||||||  |||||||||||||||||| ||||||||    
T  38987826 aaccttcctgctgccattttgatcagcaagattagttatgccgaagtg---aatggtagagttgttgctgtcaaggataagtgggaatctgattatcaac 38987922  T
Q  460 tcttcttaaaagatctacaacaagacactaaactcctcttc 500  Q
    ||||||| || ||||||||||||||| || |||| ||||||    
T  38987923 tcttcttcaatgatctacaacaagaccctcaactactcttc 38987963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 360 - 500
Target Start/End: Original strand, 39726545 - 39726682
Alignment:
Q  360 aaccttcctgctgccattttgatcaccaagattagttatgcccaagaggagaatggtagagttgttgctgttcaggataagtgggaatctggttatcaac 459  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||| |   ||||||||||||||||||||  |||||||||||||||||| ||||||||    
T  39726545 aaccttcctgctgccattttgatcagcaagattagttatgccgaagtg---aatggtagagttgttgctgtcaaggataagtgggaatctgattatcaac 39726641  T
Q  460 tcttcttaaaagatctacaacaagacactaaactcctcttc 500  Q
    ||||||| || ||||||||||||||| || |||| ||||||    
T  39726642 tcttcttcaatgatctacaacaagaccctcaactactcttc 39726682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 203 - 341
Target Start/End: Original strand, 39168795 - 39168930
Alignment:
Q  203 caaaaaatatcgtttagctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatcttggtcgtatt 302  Q
    |||||||||||| |||||||||||| |||||||||||||| ||||| ||||||||||| |   |||||||||||||||||| |||||||| |||| ||||    
T  39168795 caaaaaatatcggttagctgatgccgtggttgctcgtgtggaagattttggaaataatga---cacaacttttcaaatcaaaactcatctaggtcatatt 39168891  T
Q  303 ttaaaacccggtgaccatgctcttggttatgacctgtct 341  Q
    |||||| |||||||| ||||||||||||||||| |||||    
T  39168892 ttaaaatccggtgactatgctcttggttatgacttgtct 39168930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 204 - 341
Target Start/End: Original strand, 39399809 - 39399943
Alignment:
Q  204 aaaaaatatcgtttagctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatcttggtcgtattt 303  Q
    |||||||| ||||||||||||||| |||||||||||||| || || ||||||||||| |   ||||||||||||||||| |||||||||||||| |||||    
T  39399809 aaaaaataccgtttagctgatgccgtggttgctcgtgtggaaaattttggaaataatga---cacaacttttcaaatcaggactcatcttggtcatattt 39399905  T
Q  304 taaaacccggtgaccatgctcttggttatgacctgtct 341  Q
    ||||| |||||||| ||||||||||||||||| |||||    
T  39399906 taaaatccggtgactatgctcttggttatgacttgtct 39399943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 361 - 488
Target Start/End: Original strand, 39168974 - 39169101
Alignment:
Q  361 accttcctgctgccattttgatcaccaagattagttatgcccaagaggagaatggtaga---gttgttgctgttcaggataagtgggaatctggttatca 457  Q
    ||||||||||||| |||||||| ||||||| ||||||||   | || || |||||||||   ||||||| |||| ||| |||||||||||||| ||||||    
T  39168974 accttcctgctgcaattttgattaccaagagtagttatg---atgaagaaaatggtagaattgttgttgttgttgagggtaagtgggaatctgattatca 39169070  T
Q  458 actcttcttaaaagatctacaacaagacact 488  Q
    |||||| ||||||||||||||||||||||||    
T  39169071 actctttttaaaagatctacaacaagacact 39169101  T

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Target: chr5; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 1164000 - 1163942
Alignment:
Q  16 cacccttcactccttcattctctaggcctcagttagtggaatatgttgttcttggtatt 74  Q
    |||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||    
T  1164000 cacccttcacgccttcattctctaggcctcagttagtggaatatgctgttctcggtatt 1163942  T

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Target: chr5; HSP #21
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 1849766 - 1849823
Alignment:
Q  16 cacccttcactccttcattctctaggcctcagttagtggaatatgttgttcttggtat 73  Q
    |||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||    
T  1849766 cacccttcacgccttcattctctaggcatcagttagtggaatatgttgttctcggtat 1849823  T

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Target: chr5; HSP #22
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 517 - 583
Target Start/End: Original strand, 1850192 - 1850258
Alignment:
Q  517 accgaaatcgaaccaactgccatccatttgacacaaccatcaaatccccctttagaagaccttttta 583  Q
    ||||||||| ||||||||||||||||| || | || |||||| |||||| |||||||||||||||||    
T  1850192 accgaaatccaaccaactgccatccatctggcccacccatcagatccccttttagaagaccttttta 1850258  T

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Target: chr5; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 39168698 - 39168770
Alignment:
Q  16 cacccttcactccttcattctctaggcctcagttagtggaatatgttgttcttggtattaacctcaaggagga 88  Q
    |||||||||| | ||||||| ||||| ||||||||||| ||||||||||||||| ||||  |||| |||||||    
T  39168698 cacccttcacgcattcattcactaggactcagttagtgaaatatgttgttcttgatattgtcctccaggagga 39168770  T

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Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 434 - 476
Target Start/End: Original strand, 39400042 - 39400084
Alignment:
Q  434 ggataagtgggaatctggttatcaactcttcttaaaagatcta 476  Q
    |||||||||| |||||| |||||||||||||||| ||||||||    
T  39400042 ggataagtggcaatctgattatcaactcttcttagaagatcta 39400084  T

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Target: chr4 (Bit Score: 97; Significance: 2e-47; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 203 - 341
Target Start/End: Complemental strand, 25912427 - 25912292
Alignment:
Q  203 caaaaaatatcgtttagctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatcttggtcgtatt 302  Q
    |||||||||||||||||||||||   |||||||||||||||||||||||||||||||| |   ||||||||||||||||| |||||||||||||||||||    
T  25912427 caaaaaatatcgtttagctgatgatgtggttgctcgtgtgaaagatattggaaataatga---cacaacttttcaaatcaggactcatcttggtcgtatt 25912331  T
Q  303 ttaaaacccggtgaccatgctcttggttatgacctgtct 341  Q
     ||||||||| ||||||||||||||||||||||||||||    
T  25912330 ctaaaacccgatgaccatgctcttggttatgacctgtct 25912292  T

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Target: chr4; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 360 - 493
Target Start/End: Complemental strand, 25912252 - 25912122
Alignment:
Q  360 aaccttcctgctgccattttgatcaccaagattagttatgcccaagaggagaatggtagagttgttgctgttcaggataagtgggaatctggttatcaac 459  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||   |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  25912252 aaccttcatgctgccattttgatcaccaagattagttatgccgaagag---aatggtagagttgttgctgttcaggataagtgggaatctgattatcaac 25912156  T
Q  460 tcttcttaaaagatctacaacaagacactaaact 493  Q
    ||||||||||  ||||||| |||||| |||||||    
T  25912155 tcttcttaaattatctacagcaagaccctaaact 25912122  T

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Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 269 - 335
Target Start/End: Complemental strand, 44444838 - 44444772
Alignment:
Q  269 aacttttcaaatcaagactcatcttggtcgtattttaaaacccggtgaccatgctcttggttatgac 335  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  44444838 aacttttcaaatcaagactcatcttggtcgtattttaaaacctggtgactatgctcttggttatgac 44444772  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 25912581 - 25912528
Alignment:
Q  16 cacccttcactccttcattctctaggcctcagttagtggaatatgttgttcttg 69  Q
    |||||||||| |||| |||| |||||||||||||||| |||||| |||||||||    
T  25912581 cacccttcacgccttaattcactaggcctcagttagttgaatatattgttcttg 25912528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 423 - 483
Target Start/End: Complemental strand, 44444674 - 44444614
Alignment:
Q  423 gttgctgttcaggataagtgggaatctggttatcaactcttcttaaaagatctacaacaag 483  Q
    |||| |||||||||||| | |||||||| |||| |||| ||||||||| ||||| ||||||    
T  44444674 gttgttgttcaggataaattggaatctgattataaacttttcttaaaatatctaaaacaag 44444614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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