View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7337_high_16 (Length: 573)
Name: NF7337_high_16
Description: NF7337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7337_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 492
Target Start/End: Complemental strand, 27762244 - 27761773
Alignment:
| Q |
1 |
aatgtcttaatttaagtgaaaagtgagtccttccaagctcaataaggtaaggaagtgtggagccactttattcaaagatgtacagatggatggataaagg |
100 |
Q |
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| T |
27762244 |
aatgtcttaatttaagtcaaaagtgagtccttccaagctcaataaggtaaagaagtgtggagccactttattcaaagatgtacagatggata---aaagg |
27762148 |
T |
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| Q |
101 |
tatttattgcaatttattaaggtctttattgcaatttattattctcaattataaaatataataggnnnnnnnnat--aacagcagatattattacattga |
198 |
Q |
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| T |
27762147 |
tatttattgcaatttattaaggtctttattgcaatttattattctcaattataaaatgtaatagacttttttttttaaacagcagatattattacattga |
27762048 |
T |
|
| Q |
199 |
atgagtgcaagacgcatcaaaacatttgcgaaagccaaagaccaaaaacata-aaggtgttatatatatgcggcacatctgatacaacccaacaaaaacc |
297 |
Q |
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| T |
27762047 |
atgagtgcacgacgcatcaaaacatttgcaaaagccaaagaccaaaa-catagaaggtgttatgtatatgcggcacatatgatacaacccaacaaaaatc |
27761949 |
T |
|
| Q |
298 |
accccaactcctccaagctaaaacagcgacaaagccacacagcaagaagccaaaccaaaggaaaggagcctgatgttgaaggtatacgagggcgaaagtc |
397 |
Q |
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| T |
27761948 |
accccaact-------------------acaaagccgcacagcaagaagccaaaccaaaggaaaggagcctgatgctgaaggtatacgagggcgaaagac |
27761868 |
T |
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| Q |
398 |
caaaacagaagtgcaaaaccaaattgtctctaaaaatagtctacccgcgaatacatctacatcaacgccagctaggatacaagggaaaggagcct |
492 |
Q |
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| T |
27761867 |
caaaacagaagtgcaaaaccaaattgtctctaaaaatagtctacccgcaaatacatctacatcaacaccagctaggatacaagggaaaggagcct |
27761773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 497 - 558
Target Start/End: Complemental strand, 27756841 - 27756780
Alignment:
| Q |
497 |
ttagctaccattgaaccattcagttacaagtgcactaaagattgtgtatacaagggaacaag |
558 |
Q |
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| T |
27756841 |
ttagctaccattgaaccattcagttacaagtgcactaaagattgtgtatacaagggaacaag |
27756780 |
T |
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