View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7337_high_17 (Length: 562)
Name: NF7337_high_17
Description: NF7337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7337_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 466; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 19 - 545
Target Start/End: Original strand, 54159743 - 54160269
Alignment:
| Q |
19 |
catcactctcctacaaacattgttcagtaaaattcaaggacgagggaacagagaccaaggtgaaaggcttgagcacctttgacaaaaatgcttcaagtga |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54159743 |
catcactctcctacaaacattgttcagtaaaattcaaggacgagggaacagagaccaaggtgaaaggcttgagcacctttgacaaaaatgcttcaagtga |
54159842 |
T |
|
| Q |
119 |
tagtcctgtaattccattctcacctacaacattctcatctgcagcatccttgtagggaggtccggtccagggactgaaattaaaaatcataaaatatcaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54159843 |
tagtcctgtaattccattctcacctacaacattctcatctgcagcatccttgtagggaggtccggtccagggactgaaattaaaaatcataaaatatcaa |
54159942 |
T |
|
| Q |
219 |
tatggctagagtcctcactgacatcaagattcaggaaaggcaaacacgtnnnnnnnttccatatcaagacttagtnnnnnnnnttaagaagcaaagttaa |
318 |
Q |
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| T |
54159943 |
tatggctagagtcctcactgacatcaagattcaggaaaggcaaacacgtaaaaaaattccatattaagactttgtaaaaaaaattaagaagcaaagttaa |
54160042 |
T |
|
| Q |
319 |
aagtaaataccaaatgctttagcatgtgtgtgtttgaaaaattaattacacaacataggaaatattccacatcaaactgccccattaccaaagtaagaat |
418 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54160043 |
aagtaaataccaaatcctttagcatgtgtgtgtttgaaaaattaattacacaacgtaggaaatattccacatcaaactgccccattaccaaagtaagaat |
54160142 |
T |
|
| Q |
419 |
tcaaactaatccaccatgaaatggtggataataaagtaaacaaaaagtgtagcaaaaaatgtgagaaagcaatctacctttctggggcagtaaaaaacaa |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54160143 |
tcaaactaatccaccatgaaatggtggataataaagtaaacaaaaagtgtagcaaaaaatgtgagaaagcaatctacctttctggggcagtaaaaaacaa |
54160242 |
T |
|
| Q |
519 |
ttcttcaagttcttcaggttgcaaaat |
545 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
54160243 |
ttcttcaagttcttcaggttgcaaaat |
54160269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 420 - 543
Target Start/End: Complemental strand, 53867198 - 53867076
Alignment:
| Q |
420 |
caaactaatccaccatgaaatggtggataataaagtaaacaaaaagtgtagcaaaaaatgtgagaaagcaatctacctttctggggcagtaaaaaacaat |
519 |
Q |
| |
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|||| ||||| | |||||||||| ||||||||||| || || |||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||| |
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| T |
53867198 |
caaattaatcaagcatgaaatggatgataataaagtgaa-aataagtatagcaaaaaatgtgagaaagcaatctacctttccggggcagtagaaaacaat |
53867100 |
T |
|
| Q |
520 |
tcttcaagttcttcaggttgcaaa |
543 |
Q |
| |
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|||| ||||||||||||||||||| |
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|
| T |
53867099 |
tctttaagttcttcaggttgcaaa |
53867076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 151 - 215
Target Start/End: Complemental strand, 53867453 - 53867389
Alignment:
| Q |
151 |
tctcatctgcagcatccttgtagggaggtccggtccagggactgaaattaaaaatcataaaatat |
215 |
Q |
| |
|
|||||||||||||||||| |||||||| |||| |||| ||||||||||||| | ||||||||||| |
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|
| T |
53867453 |
tctcatctgcagcatcctcgtagggagctccgatccaaggactgaaattaacagtcataaaatat |
53867389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 125
Target Start/End: Complemental strand, 53867559 - 53867464
Alignment:
| Q |
30 |
tacaaacattgttcagtaaaattcaaggacgagggaacagagaccaaggtgaaaggcttgagcacctttgacaaaaatgcttcaagtgatagtcct |
125 |
Q |
| |
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|||| |||||||||| ||||| | |||| ||||||| |||||| |||| ||| || ||||||||||||||||||||| ||||||||||||||| |
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|
| T |
53867559 |
tacacacattgttcaacaaaatgcgaggaagagggaatagagactaaggaaaaaaactcgagcacctttgacaaaaatgcatcaagtgatagtcct |
53867464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 486 - 530
Target Start/End: Complemental strand, 36874901 - 36874857
Alignment:
| Q |
486 |
agcaatctacctttctggggcagtaaaaaacaattcttcaagttc |
530 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
36874901 |
agcaatctacctttccggggcagtggaaaacaattcttcaagttc |
36874857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 184 - 218
Target Start/End: Original strand, 15049521 - 15049555
Alignment:
| Q |
184 |
tccagggactgaaattaaaaatcataaaatatcaa |
218 |
Q |
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||||||||||| ||||||||||||||||||||||| |
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| T |
15049521 |
tccagggactgcaattaaaaatcataaaatatcaa |
15049555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 184 - 218
Target Start/End: Original strand, 17881982 - 17882016
Alignment:
| Q |
184 |
tccagggactgaaattaaaaatcataaaatatcaa |
218 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |
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|
| T |
17881982 |
tccagggactgcaattaaaaatcataaaatatcaa |
17882016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 125
Target Start/End: Original strand, 14774579 - 14774636
Alignment:
| Q |
68 |
agagaccaaggtgaaaggcttgagcacctttgacaaaaatgcttcaagtgatagtcct |
125 |
Q |
| |
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|||||| ||| | |||| |||| |||||| |||||||||||| ||||||||||||||| |
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| T |
14774579 |
agagacaaagataaaagacttgtgcacctctgacaaaaatgcatcaagtgatagtcct |
14774636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 486 - 530
Target Start/End: Original strand, 15049735 - 15049779
Alignment:
| Q |
486 |
agcaatctacctttctggggcagtaaaaaacaattcttcaagttc |
530 |
Q |
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||||||||||||||| || |||||| |||||| |||||||||||| |
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| T |
15049735 |
agcaatctacctttccggagcagtagaaaacagttcttcaagttc |
15049779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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