View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7337_high_25 (Length: 510)
Name: NF7337_high_25
Description: NF7337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7337_high_25 |
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Alignment Details
Target: chr7 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 12 - 494
Target Start/End: Original strand, 12874721 - 12875199
Alignment:
| Q |
12 |
tattcttttcgtacaaatatttatttctttcctttactatccttttttatcaatttcataatttgcattattatggacaataacagatatgaatgtgatc |
111 |
Q |
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| T |
12874721 |
tattattttcgtacaaatatttatttctttcctttactatccttttttatcaattt---aatttgcattattatgaacaataacaaatgtgaatgtgatc |
12874817 |
T |
|
| Q |
112 |
cgtcagttggtagtagtacctggcatctctcccaaaagcactttaaatatacgtttatccaatcacgttaaaagcatggt------cagtcaataagctg |
205 |
Q |
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| T |
12874818 |
cgacagttagt----gtac-tggcatctc--ccaaaagcactttaaatatacgtttatccaatcacgttaaaagcatggtcttggtcagtcaataagctg |
12874910 |
T |
|
| Q |
206 |
atattttattatcctcatatcacttttatcaaataattcatttctcatttccaacaatcatggcatctgaaataactaccataaaagcttggacttactc |
305 |
Q |
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| T |
12874911 |
atattttattatcctcaaatcacttttatcaaataattcatttctcatttccaacaatcatggcctctgaaataactaccatcaaagcttggacttactc |
12875010 |
T |
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| Q |
306 |
agaatatggtcactctgttgatgttctcaaatttgatccaaacgtgcctattcctgaagtgaaggatgatcaagttcttatcaaagttgctgctgcttct |
405 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12875011 |
agaatatggtcactctgttgatgttctcaagtttgatccaaacgtgcctattcctcaagtgaaggatgatcaagttcttatcaaagttgctgctgcttct |
12875110 |
T |
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| Q |
406 |
cttaatcccattgattataagagaatggaaggagccttcaaagcatctgactcccctttaccagtaatccatttcatttatattatatt |
494 |
Q |
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| T |
12875111 |
cttaatcccattgattataagagaatggaaggagccttcaaagcctctgactcccctttaccagtaatccatttcatttatattatatt |
12875199 |
T |
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